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The map label for this gene is yddU [C]

Identifier: 89053129

GI number: 89053129

Start: 610827

End: 612371

Strand: Reverse

Name: yddU [C]

Synonym: Jann_0638

Alternate gene names: 89053129

Gene position: 612371-610827 (Counterclockwise)

Preceding gene: 89053131

Following gene: 89053128

Centisome position: 14.18

GC content: 65.5

Gene sequence:

>1545_bases
ATGGCAAGAATACGGACAGACCATGAAGATCGCGGGCGGCTGGGCGTTTTGGCGCGAAGGATCCGCATGGCGCTGGGCCG
GGTAGAGGTGCTGGCCCTGTTCCCACTGATCGCCATCAGTGCCACCGCACTGGGCTTTGACGATCTGGCCTTGGTCACCG
CCATCGGCCTTTCGGCGCTTCTGGCCATTGGCGGGGTCGGTGCGCGGGCAGCCCAGCCTGTCGCGACGTCCGACAGACCA
ACGGCCAACGGACGCGGCGCGCTTGTTGCCATGCTGGACCGCGTGGCAGATCTGCCCGGCCGCGATACCGCCTGCATCCT
GTTGCAGATTGATGACTGGGCCTTGCTGCACGATAGATGGGGCCACGACACCCGCGAAGATCTGGCAGCCCGCGTGGAGG
ATCGTCTTCAGACCGCTTTGCGCAACGGCGATCTGCTGACCCGTCTGGGCGATGCACGCTTCGGCATCGTGCTGTCGCCC
TTGCCGTCGGCGCGTCTGGGCCTGCGCGACACGATCACGACCCGATTGGCGGACGCCGTTGCCGATCCGCTGCCCATGCG
CGGCACCGCCCTGCGCCTGACGGCGTCGATCGGGCATTCGGCGATGATCAAACAGGGCGTCGATCCCGCTGACACGACAT
TCAAGGCCGCAGAGGCCGCGCTGGGGGAGGCGACGGCCAACGGCCCCGGTACGATCCGCGCTTACGCTCCGGGCATGGGT
CGTGCCCGCGCCTTGCAGTCCAGCCTGAGCGAGGAGGTTGAGGCCGCAATCCACGACGGCGCGATCACCGCCTGGTTTCA
GCCGCAAATCCACGCGCGGACCGGCACCCTTGCCGGGATGGAGACATTGGCCCGTTGGCAGCACCCCAACCACGGCGTCC
TTGGCCCGAAAGAGTTCTTTTCGGCGGTGGAGGCCTCGGGTCACATGCCGCTGCTGGGTCAAACCTTGCTGCATCAGGCG
CTGAAGGCGTTACAGGACTGGGATGCGATGAGCGCCCATATCCCGCTGATCACGATCAACTTTTCCGCGACCGAATTGCG
CGATCAGAATCTGGCGGCCACCCTCGCCAGCGAAGTCGCGCGCTACGGCCTTGCGCCGGAGCGGGTCGTTGTCGAAATCT
CCGAAACCGTCGCCACCCAGGTCGAGGACGACGCAATCGTCGCAACGTTGCAGGCGATGCGACATGCAGGTCACAGGCTG
GATCTGGACGGGTTCGGCCTGGGCGCTGCATCCTTGCCCACGCTACAGCGCTTCGCCGTGAGCCGGGTCAAGATCGACCG
CAGCTTTGTGCTCGACATCGACCTTGACCACGGCAAACGTCAAAGCGTCACCGCGATCGTGGCAATGGCGAAGGCCATGG
GGATTGAAACCATCGCCAACGGCGTTGAAACGCAGACCGAGCAGGATGCGCTGCTCGCGCTTGGATGCGACTATCTGCAG
GGATTCGGCGTGGCGCGCCCGATGGGGTTGGACAACGTTGCAGACTGGGCCCGCGCCCACGGTGCCGCGGGGAAAACCAT
TCGCCTGGATGATCGACGCGCCTGA

Upstream 100 bases:

>100_bases
GCGGAAACCAAGGCCCGCGCCCCCGGGGCTTAACCTTCTGTTTGCATCCTTGATGCTACGCCTGTCCGGCGGACCGCGAA
CATCGGAGCATACGGGTCAC

Downstream 100 bases:

>100_bases
GCAACGCCCCCCCCCAGGCTGCCTCGAAGCGGACGAGACAGCTTCAGAAGGCCACCCCCCGCCAATGACCCATTGCGGGG
TTGGGCAAGACCGCGCAACA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MARIRTDHEDRGRLGVLARRIRMALGRVEVLALFPLIAISATALGFDDLALVTAIGLSALLAIGGVGARAAQPVATSDRP
TANGRGALVAMLDRVADLPGRDTACILLQIDDWALLHDRWGHDTREDLAARVEDRLQTALRNGDLLTRLGDARFGIVLSP
LPSARLGLRDTITTRLADAVADPLPMRGTALRLTASIGHSAMIKQGVDPADTTFKAAEAALGEATANGPGTIRAYAPGMG
RARALQSSLSEEVEAAIHDGAITAWFQPQIHARTGTLAGMETLARWQHPNHGVLGPKEFFSAVEASGHMPLLGQTLLHQA
LKALQDWDAMSAHIPLITINFSATELRDQNLAATLASEVARYGLAPERVVVEISETVATQVEDDAIVATLQAMRHAGHRL
DLDGFGLGAASLPTLQRFAVSRVKIDRSFVLDIDLDHGKRQSVTAIVAMAKAMGIETIANGVETQTEQDALLALGCDYLQ
GFGVARPMGLDNVADWARAHGAAGKTIRLDDRRA

Sequences:

>Translated_514_residues
MARIRTDHEDRGRLGVLARRIRMALGRVEVLALFPLIAISATALGFDDLALVTAIGLSALLAIGGVGARAAQPVATSDRP
TANGRGALVAMLDRVADLPGRDTACILLQIDDWALLHDRWGHDTREDLAARVEDRLQTALRNGDLLTRLGDARFGIVLSP
LPSARLGLRDTITTRLADAVADPLPMRGTALRLTASIGHSAMIKQGVDPADTTFKAAEAALGEATANGPGTIRAYAPGMG
RARALQSSLSEEVEAAIHDGAITAWFQPQIHARTGTLAGMETLARWQHPNHGVLGPKEFFSAVEASGHMPLLGQTLLHQA
LKALQDWDAMSAHIPLITINFSATELRDQNLAATLASEVARYGLAPERVVVEISETVATQVEDDAIVATLQAMRHAGHRL
DLDGFGLGAASLPTLQRFAVSRVKIDRSFVLDIDLDHGKRQSVTAIVAMAKAMGIETIANGVETQTEQDALLALGCDYLQ
GFGVARPMGLDNVADWARAHGAAGKTIRLDDRRA
>Mature_513_residues
ARIRTDHEDRGRLGVLARRIRMALGRVEVLALFPLIAISATALGFDDLALVTAIGLSALLAIGGVGARAAQPVATSDRPT
ANGRGALVAMLDRVADLPGRDTACILLQIDDWALLHDRWGHDTREDLAARVEDRLQTALRNGDLLTRLGDARFGIVLSPL
PSARLGLRDTITTRLADAVADPLPMRGTALRLTASIGHSAMIKQGVDPADTTFKAAEAALGEATANGPGTIRAYAPGMGR
ARALQSSLSEEVEAAIHDGAITAWFQPQIHARTGTLAGMETLARWQHPNHGVLGPKEFFSAVEASGHMPLLGQTLLHQAL
KALQDWDAMSAHIPLITINFSATELRDQNLAATLASEVARYGLAPERVVVEISETVATQVEDDAIVATLQAMRHAGHRLD
LDGFGLGAASLPTLQRFAVSRVKIDRSFVLDIDLDHGKRQSVTAIVAMAKAMGIETIANGVETQTEQDALLALGCDYLQG
FGVARPMGLDNVADWARAHGAAGKTIRLDDRRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=413, Percent_Identity=26.3922518159806, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1787541, Length=436, Percent_Identity=24.7706422018349, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI226510982, Length=378, Percent_Identity=28.042328042328, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI87081845, Length=251, Percent_Identity=29.8804780876494, Blast_Score=118, Evalue=9e-28,
Organism=Escherichia coli, GI1786507, Length=252, Percent_Identity=29.7619047619048, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1790496, Length=256, Percent_Identity=26.953125, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87081743, Length=261, Percent_Identity=27.5862068965517, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=25.8964143426295, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787055, Length=242, Percent_Identity=26.0330578512397, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI87082096, Length=253, Percent_Identity=29.2490118577075, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081980, Length=258, Percent_Identity=26.3565891472868, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788849, Length=212, Percent_Identity=27.3584905660377, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787410, Length=163, Percent_Identity=28.2208588957055, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 54740; Mature: 54609

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: PS00052 RIBOSOMAL_S7 ; PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIRTDHEDRGRLGVLARRIRMALGRVEVLALFPLIAISATALGFDDLALVTAIGLSAL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LAIGGVGARAAQPVATSDRPTANGRGALVAMLDRVADLPGRDTACILLQIDDWALLHDRW
HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEHHHC
GHDTREDLAARVEDRLQTALRNGDLLTRLGDARFGIVLSPLPSARLGLRDTITTRLADAV
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
ADPLPMRGTALRLTASIGHSAMIKQGVDPADTTFKAAEAALGEATANGPGTIRAYAPGMG
CCCCCCCCCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
RARALQSSLSEEVEAAIHDGAITAWFQPQIHARTGTLAGMETLARWQHPNHGVLGPKEFF
HHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHH
SAVEASGHMPLLGQTLLHQALKALQDWDAMSAHIPLITINFSATELRDQNLAATLASEVA
HHHHCCCCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEECCHHHHCCHHHHHHHHHHHH
RYGLAPERVVVEISETVATQVEDDAIVATLQAMRHAGHRLDLDGFGLGAASLPTLQRFAV
HHCCCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHH
SRVKIDRSFVLDIDLDHGKRQSVTAIVAMAKAMGIETIANGVETQTEQDALLALGCDYLQ
HHHEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHH
GFGVARPMGLDNVADWARAHGAAGKTIRLDDRRA
CCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCC
>Mature Secondary Structure 
ARIRTDHEDRGRLGVLARRIRMALGRVEVLALFPLIAISATALGFDDLALVTAIGLSAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LAIGGVGARAAQPVATSDRPTANGRGALVAMLDRVADLPGRDTACILLQIDDWALLHDRW
HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEHHHC
GHDTREDLAARVEDRLQTALRNGDLLTRLGDARFGIVLSPLPSARLGLRDTITTRLADAV
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
ADPLPMRGTALRLTASIGHSAMIKQGVDPADTTFKAAEAALGEATANGPGTIRAYAPGMG
CCCCCCCCCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
RARALQSSLSEEVEAAIHDGAITAWFQPQIHARTGTLAGMETLARWQHPNHGVLGPKEFF
HHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHH
SAVEASGHMPLLGQTLLHQALKALQDWDAMSAHIPLITINFSATELRDQNLAATLASEVA
HHHHCCCCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEECCHHHHCCHHHHHHHHHHHH
RYGLAPERVVVEISETVATQVEDDAIVATLQAMRHAGHRLDLDGFGLGAASLPTLQRFAV
HHCCCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHH
SRVKIDRSFVLDIDLDHGKRQSVTAIVAMAKAMGIETIANGVETQTEQDALLALGCDYLQ
HHHEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHH
GFGVARPMGLDNVADWARAHGAAGKTIRLDDRRA
CCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]