Click here to switch to the map view.

The map label for this gene is ligT [C]

Identifier: 89053019

GI number: 89053019

Start: 518153

End: 518689

Strand: Reverse

Name: ligT [C]

Synonym: Jann_0528

Alternate gene names: 89053019

Gene position: 518689-518153 (Counterclockwise)

Preceding gene: 89053020

Following gene: 89053017

Centisome position: 12.01

GC content: 64.62

Gene sequence:

>537_bases
ATGCGGGCCTTTGTTGCTCTGCCTCTCACCGATCCGGCCATCGACGCTTTGACGCGAGTGCAATCCACGCTTCCCACGGG
CAAGCCAGTGCCGGAGGAGAACTTGCATCTGACCCTCGCCTATCTGGGTGAGGTATCCGAGGACGTTCTGGAGACCTTGC
ATGATATGTTGAGCGCGGCGCGGCTTCCGTCCGCCGATATCGCATTTGAGGGCCTTGGCACCTTTGCGGAGATGGAGCGC
GGGCTGACATTTGGCGCTGTCGCCCCCAGTGACGCCCTCACAGCGCTCCAGACCAAGGTCGCCCAACTCGCGCGGCAGGC
GGGGGTGCTGCTTCCCCGCCGCAGGTTCCGGCCCCATGTCACCCTGACCCGTGCCAACAGGCAACCCAAAGGCCCGACCC
GGGACCGTTTGGCCAGCGCCATCGGCACGCCGATCAAGGTGCCAGGCTTCACCGCCCGTACCGCAAACCTCTACGAATCC
ACCCTGACGCCATCGGGCGCGCGACATGAGGTTCTGGCTAGCTACCCCCTCGGATAA

Upstream 100 bases:

>100_bases
TATGCCGGAGTTCGACACCTCGGTCAGCATCCGTGATCTGGGGATCACGTTCACCCCCGCCACCACGGCCCTGAAGCGCG
CCGCGGACGCCGTCACCTGA

Downstream 100 bases:

>100_bases
CCTGCCGCTCCAACGCGTCGATCAATCGCTGCCGCGCTGCGGGCAACGGCTTGTCGCCGAGGCTTGGGGCGAGATGCGTC
GCAAGGAAATGACCCGTCAC

Product: 2',5' RNA ligase

Products: NA

Alternate protein names: 2 5' RNA Ligase; MalA S; 2 5 RNA Ligase

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MRAFVALPLTDPAIDALTRVQSTLPTGKPVPEENLHLTLAYLGEVSEDVLETLHDMLSAARLPSADIAFEGLGTFAEMER
GLTFGAVAPSDALTALQTKVAQLARQAGVLLPRRRFRPHVTLTRANRQPKGPTRDRLASAIGTPIKVPGFTARTANLYES
TLTPSGARHEVLASYPLG

Sequences:

>Translated_178_residues
MRAFVALPLTDPAIDALTRVQSTLPTGKPVPEENLHLTLAYLGEVSEDVLETLHDMLSAARLPSADIAFEGLGTFAEMER
GLTFGAVAPSDALTALQTKVAQLARQAGVLLPRRRFRPHVTLTRANRQPKGPTRDRLASAIGTPIKVPGFTARTANLYES
TLTPSGARHEVLASYPLG
>Mature_178_residues
MRAFVALPLTDPAIDALTRVQSTLPTGKPVPEENLHLTLAYLGEVSEDVLETLHDMLSAARLPSADIAFEGLGTFAEMER
GLTFGAVAPSDALTALQTKVAQLARQAGVLLPRRRFRPHVTLTRANRQPKGPTRDRLASAIGTPIKVPGFTARTANLYES
TLTPSGARHEVLASYPLG

Specific function: Specifically Ligates tRNA Half-Molecules Containing Nucleoside Base Modifications And Shows A Preference Among Different tRNA Species. Acts In The Absence Of ATP To Form A 2'-5' Phosphodiester Linkage. [C]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 6.5.1.- [C]

Molecular weight: Translated: 19091; Mature: 19091

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAFVALPLTDPAIDALTRVQSTLPTGKPVPEENLHLTLAYLGEVSEDVLETLHDMLSAA
CCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
RLPSADIAFEGLGTFAEMERGLTFGAVAPSDALTALQTKVAQLARQAGVLLPRRRFRPHV
CCCCCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCE
TLTRANRQPKGPTRDRLASAIGTPIKVPGFTARTANLYESTLTPSGARHEVLASYPLG
EEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCC
>Mature Secondary Structure
MRAFVALPLTDPAIDALTRVQSTLPTGKPVPEENLHLTLAYLGEVSEDVLETLHDMLSAA
CCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
RLPSADIAFEGLGTFAEMERGLTFGAVAPSDALTALQTKVAQLARQAGVLLPRRRFRPHV
CCCCCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCE
TLTRANRQPKGPTRDRLASAIGTPIKVPGFTARTANLYESTLTPSGARHEVLASYPLG
EEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA