| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053008
Identifier: 89053008
GI number: 89053008
Start: 511120
End: 511557
Strand: Direct
Name: 89053008
Synonym: Jann_0517
Alternate gene names: NA
Gene position: 511120-511557 (Clockwise)
Preceding gene: 89053007
Following gene: 89053009
Centisome position: 11.84
GC content: 56.16
Gene sequence:
>438_bases ATGGCCGTTAACCTCAAACGCTATGGGTTGGTGTATCTTGGTACGATCGTCGGGCTTGTGGGGCTGTCGAACGCGATGGT GTACTTTCTTGACATGTCATTGCCGACCGGCATTTCAACGATCCTGCCGGCATGGCTTGCGGCCATGACGGAGGGGCAGA AAGCGTCCGACGCGAAGGCCCCGCAATACACTGGTCCGCAGGCCTGGGCACAGGCGCGGCGCATGACCGTTGTGGTTGTC GTAATCAACTGCATCTTTGGCGCAATCATATTTATCTACTCTGACGTTGCCACACTTCTTGCACAGGCACCGGTTCTGAT CACCGCTTTGCTTCTGATCGGGTTTGCTGTCACGTTCCTGGTCAACCGGTTTGCGTTGACCTGGGGCTACAAGGTTCAAC ACAGAGCAATCGTGCGGAAGGAGTCTCGGGTCGGATGA
Upstream 100 bases:
>100_bases CCGAGCTGAACATTGGCCACTTTCTGATTGGCGAATCGATCTTTGTCGGGCTTGAGGCTGCCATGACCGAGATGCGTGCC CGTATGGATGCGGCGCGGTG
Downstream 100 bases:
>100_bases CAGTCTCTTGGGTAGGACAGCAGGCGTTTGGCATGGCACTGGGCGCGACGCTTCTTTGCGCAAACCCCGTATCGGCCTTC GTGACCGCACCTTGTGGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MAVNLKRYGLVYLGTIVGLVGLSNAMVYFLDMSLPTGISTILPAWLAAMTEGQKASDAKAPQYTGPQAWAQARRMTVVVV VINCIFGAIIFIYSDVATLLAQAPVLITALLLIGFAVTFLVNRFALTWGYKVQHRAIVRKESRVG
Sequences:
>Translated_145_residues MAVNLKRYGLVYLGTIVGLVGLSNAMVYFLDMSLPTGISTILPAWLAAMTEGQKASDAKAPQYTGPQAWAQARRMTVVVV VINCIFGAIIFIYSDVATLLAQAPVLITALLLIGFAVTFLVNRFALTWGYKVQHRAIVRKESRVG >Mature_144_residues AVNLKRYGLVYLGTIVGLVGLSNAMVYFLDMSLPTGISTILPAWLAAMTEGQKASDAKAPQYTGPQAWAQARRMTVVVVV INCIFGAIIFIYSDVATLLAQAPVLITALLLIGFAVTFLVNRFALTWGYKVQHRAIVRKESRVG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15749; Mature: 15618
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVNLKRYGLVYLGTIVGLVGLSNAMVYFLDMSLPTGISTILPAWLAAMTEGQKASDAKA CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC PQYTGPQAWAQARRMTVVVVVINCIFGAIIFIYSDVATLLAQAPVLITALLLIGFAVTFL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH VNRFALTWGYKVQHRAIVRKESRVG HHHHHHHCCCHHHHHHHHHHHCCCC >Mature Secondary Structure AVNLKRYGLVYLGTIVGLVGLSNAMVYFLDMSLPTGISTILPAWLAAMTEGQKASDAKA CCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC PQYTGPQAWAQARRMTVVVVVINCIFGAIIFIYSDVATLLAQAPVLITALLLIGFAVTFL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH VNRFALTWGYKVQHRAIVRKESRVG HHHHHHHCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA