| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89052910
Identifier: 89052910
GI number: 89052910
Start: 422110
End: 423360
Strand: Reverse
Name: 89052910
Synonym: Jann_0419
Alternate gene names: NA
Gene position: 423360-422110 (Counterclockwise)
Preceding gene: 89052916
Following gene: 89052907
Centisome position: 9.8
GC content: 67.31
Gene sequence:
>1251_bases ATGCCAGCACTCATCCGCGAGAATCGCAACTTCCGCCTGCTGATGTCCGGGGCGGGCGTGTCGAACCTGTCTGACGGGAT CGGCGCGCTGGCCTTTCCGTGGATGGCGACCCTGATCACCACTGACCCGCGCGCTTTAGCGATTGTCGCCTTCGCCACGC GCCTGCCGTGGTTCCTGTGGTCCCTGCCCGTGGGCGTCTGGACGGACCGCGCGGATCGGCAGAAGATGATGGTGCGCGCG GATCTGGCGCGCATGGCGCTGGCCATGGCGGTTGTCGCGCTGATCGTTGCGGGCCCGAGGGACGGGGGGCAGGTCGCTTG GATGATCGGCGGATTGGCGGCGCTGGCCTTCCTTATGGGCACCGCAGAAGTCTTCCGCGACAACGCAGCCCAAACCGCCC TTCCCAGCGTTGTGCCCAAGGACCGGCTGGAAGAAGCCAACGGCCAGATCTGGTCGGTAGAACAGGTCATGGGTCAGTTC ATCGGGCCGCCGCTGGCAGGCTTCCTGATCGCGGTCGCCGCCCCCGCGCCGTTCCTGTTTGAAGCGTTGGGCTTCGCGCT GGCGGCCTTCGCCGTCTGGGCCATTGCCTTCCCCGCGCGCGGCGCATTGGTCCCGCGCCGGGGCTTCTGGACCGAGATGA ATGCGGGCTGGACGTGGATCCGCGAGCATAAGGTGATCCTGCAACTGGCGCTGATACTGGGCGGGTTGAACGCCGCCCAT ATGGCCGGGTTCACCATTCTCGTCCTGTTCAGCCAGGAGGTTCTTGGCCTGGGCGCGGTGGGCCACGGAATGCTGCTGAC GGCAGGGGCCGCTGGCGGCGTCGCGGGCGGGTTGCTATGCCCCTGGGTCGCCAAGCGCCTCGGCGCATCGCGCAGCCTGT GGGTGGCGCTGGCGTTGATGCCGCTGCCGTTTCTGGGCCTGTATTTCACGTCTCAGGTCTGGGTCGCGGTGGTCCTGCTG TTTCTGGAAACCTTCGTGGCGGTCCTGTGGAACGTCGTCACCGTATCGTTCCGCCAGCGCGTCATCCCCGACGCGCTTCT GGGCCGGGTGAACTCCATCTACCGCTTCTTCGGCTGGGGCATGATGCCCCTTGGTGCGCTGGCGGGCGGCTGGATCATGG CGCTGGCGGAGCCGTCCATGGGCCGCGAAGATGCGCTGCGGCTGGTGTTCCTGCTCTGCGCGGGGCTGTTCGCCGCGCTT TTCCTCTATGGATTGGCGCGATTGCGGTTGCCGAAGGGGGCGGCGGGGTAA
Upstream 100 bases:
>100_bases CGAGGAGCACAAGCGCGAGAAGGAGTTTGAACAAAAACCGCATGGGGGACATTGTGCTTCTCACACGCGCCAGCGCAAGG TGCTTGCAAAGGAGAGGCCG
Downstream 100 bases:
>100_bases ACCCTGCCCTAAGGGGCAAAGCGGCTTGCCTTAGGTGCGGTCCGTCAACAGACGCAGGCCCGCATAGGCAAAGAATGTGC CCAAGACGCCCTGGATCCCA
Product: major facilitator transporter
Products: NA
Alternate protein names: Antibiotic Efflux Protein; Facilitator Superfamily Protein; Antibiotic Transporter; Facilitator Superfamily Transporter; Facilitator MFS1 Protein; Integral Membrane Efflux Protein; MFS Transporter; Facilitator Family Transporter; Facilitator Superfamily Permease; MFS Superfamily Transporter
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MPALIRENRNFRLLMSGAGVSNLSDGIGALAFPWMATLITTDPRALAIVAFATRLPWFLWSLPVGVWTDRADRQKMMVRA DLARMALAMAVVALIVAGPRDGGQVAWMIGGLAALAFLMGTAEVFRDNAAQTALPSVVPKDRLEEANGQIWSVEQVMGQF IGPPLAGFLIAVAAPAPFLFEALGFALAAFAVWAIAFPARGALVPRRGFWTEMNAGWTWIREHKVILQLALILGGLNAAH MAGFTILVLFSQEVLGLGAVGHGMLLTAGAAGGVAGGLLCPWVAKRLGASRSLWVALALMPLPFLGLYFTSQVWVAVVLL FLETFVAVLWNVVTVSFRQRVIPDALLGRVNSIYRFFGWGMMPLGALAGGWIMALAEPSMGREDALRLVFLLCAGLFAAL FLYGLARLRLPKGAAG
Sequences:
>Translated_416_residues MPALIRENRNFRLLMSGAGVSNLSDGIGALAFPWMATLITTDPRALAIVAFATRLPWFLWSLPVGVWTDRADRQKMMVRA DLARMALAMAVVALIVAGPRDGGQVAWMIGGLAALAFLMGTAEVFRDNAAQTALPSVVPKDRLEEANGQIWSVEQVMGQF IGPPLAGFLIAVAAPAPFLFEALGFALAAFAVWAIAFPARGALVPRRGFWTEMNAGWTWIREHKVILQLALILGGLNAAH MAGFTILVLFSQEVLGLGAVGHGMLLTAGAAGGVAGGLLCPWVAKRLGASRSLWVALALMPLPFLGLYFTSQVWVAVVLL FLETFVAVLWNVVTVSFRQRVIPDALLGRVNSIYRFFGWGMMPLGALAGGWIMALAEPSMGREDALRLVFLLCAGLFAAL FLYGLARLRLPKGAAG >Mature_415_residues PALIRENRNFRLLMSGAGVSNLSDGIGALAFPWMATLITTDPRALAIVAFATRLPWFLWSLPVGVWTDRADRQKMMVRAD LARMALAMAVVALIVAGPRDGGQVAWMIGGLAALAFLMGTAEVFRDNAAQTALPSVVPKDRLEEANGQIWSVEQVMGQFI GPPLAGFLIAVAAPAPFLFEALGFALAAFAVWAIAFPARGALVPRRGFWTEMNAGWTWIREHKVILQLALILGGLNAAHM AGFTILVLFSQEVLGLGAVGHGMLLTAGAAGGVAGGLLCPWVAKRLGASRSLWVALALMPLPFLGLYFTSQVWVAVVLLF LETFVAVLWNVVTVSFRQRVIPDALLGRVNSIYRFFGWGMMPLGALAGGWIMALAEPSMGREDALRLVFLLCAGLFAALF LYGLARLRLPKGAAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44556; Mature: 44424
Theoretical pI: Translated: 10.90; Mature: 10.90
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPALIRENRNFRLLMSGAGVSNLSDGIGALAFPWMATLITTDPRALAIVAFATRLPWFLW CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH SLPVGVWTDRADRQKMMVRADLARMALAMAVVALIVAGPRDGGQVAWMIGGLAALAFLMG HCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH TAEVFRDNAAQTALPSVVPKDRLEEANGQIWSVEQVMGQFIGPPLAGFLIAVAAPAPFLF HHHHHHCCCHHHHCCCCCCHHHHHHHCCCEEEHHHHHHHHHCCHHHHHHHHHHCCCHHHH EALGFALAAFAVWAIAFPARGALVPRRGFWTEMNAGWTWIREHKVILQLALILGGLNAAH HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH MAGFTILVLFSQEVLGLGAVGHGMLLTAGAAGGVAGGLLCPWVAKRLGASRSLWVALALM HHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH PLPFLGLYFTSQVWVAVVLLFLETFVAVLWNVVTVSFRQRVIPDALLGRVNSIYRFFGWG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC MMPLGALAGGWIMALAEPSMGREDALRLVFLLCAGLFAALFLYGLARLRLPKGAAG HHHHHHHHCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure PALIRENRNFRLLMSGAGVSNLSDGIGALAFPWMATLITTDPRALAIVAFATRLPWFLW CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH SLPVGVWTDRADRQKMMVRADLARMALAMAVVALIVAGPRDGGQVAWMIGGLAALAFLMG HCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH TAEVFRDNAAQTALPSVVPKDRLEEANGQIWSVEQVMGQFIGPPLAGFLIAVAAPAPFLF HHHHHHCCCHHHHCCCCCCHHHHHHHCCCEEEHHHHHHHHHCCHHHHHHHHHHCCCHHHH EALGFALAAFAVWAIAFPARGALVPRRGFWTEMNAGWTWIREHKVILQLALILGGLNAAH HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH MAGFTILVLFSQEVLGLGAVGHGMLLTAGAAGGVAGGLLCPWVAKRLGASRSLWVALALM HHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH PLPFLGLYFTSQVWVAVVLLFLETFVAVLWNVVTVSFRQRVIPDALLGRVNSIYRFFGWG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC MMPLGALAGGWIMALAEPSMGREDALRLVFLLCAGLFAALFLYGLARLRLPKGAAG HHHHHHHHCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA