| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89052901
Identifier: 89052901
GI number: 89052901
Start: 412521
End: 413003
Strand: Reverse
Name: 89052901
Synonym: Jann_0410
Alternate gene names: NA
Gene position: 413003-412521 (Counterclockwise)
Preceding gene: 89052902
Following gene: 89052900
Centisome position: 9.56
GC content: 61.08
Gene sequence:
>483_bases ATGTCGTTATTTAGACGCAGAACTCTGTTGGTCTTGCTCAGCGCATTGCCGCTGGCCGCGTGCAATTTCCAGCCGGTCTA TGGGCCGGGCGGATCTGGCGACATCATTCGTGATCAGATCCGGGTGGCCGAACCCAATTCCAGGTTGGAGTTTGAGCTAG TCTCCCGCCTGGAAGATCGCCTTGGCGCCGGGTCCAGCTACGCGCTGAACTACAGCGTCTCTGTTGCGACCCGGAACCTC GCGATTGACGAGACGGCGGTGATCAACCGCGTCAACCTTGTGGGCAACCTCAATTTCAATGTGACGGAGGTCGGAACGGG GCGGAACGTCCAGACCGCCACGGTGTCGACGTTCACCTCTTACGCCACAACGGAATCGCCAGTGGCCACCGAATCCGCGC GCCGCGATGCGGAGGATCGTTTGGCGGTCGCCTTGGCCGATCAAATGGTCACGCGCCTCATCGCCGGGGCGCAATCCTGG TGA
Upstream 100 bases:
>100_bases GAAGAGGTTGAAAAACGCGCGCTTGCAGACGACGCTGTGGTCAGGGCGTTGGATGGGGCCGCGCCGAAAAAGCTGATCGT TGTCCCCGGACGGATCGTGA
Downstream 100 bases:
>100_bases AGATCTTTCGATGAAGCTCTCCACCCGCGATGCAAACGTCTATTTCAAGCGGCCCGATACCTCTGCCGCCGGGTGCCTGA TTTTCGGCGACGACGCCATG
Product: putative lipoprotein
Products: NA
Alternate protein names: Lipoprotein
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MSLFRRRTLLVLLSALPLAACNFQPVYGPGGSGDIIRDQIRVAEPNSRLEFELVSRLEDRLGAGSSYALNYSVSVATRNL AIDETAVINRVNLVGNLNFNVTEVGTGRNVQTATVSTFTSYATTESPVATESARRDAEDRLAVALADQMVTRLIAGAQSW
Sequences:
>Translated_160_residues MSLFRRRTLLVLLSALPLAACNFQPVYGPGGSGDIIRDQIRVAEPNSRLEFELVSRLEDRLGAGSSYALNYSVSVATRNL AIDETAVINRVNLVGNLNFNVTEVGTGRNVQTATVSTFTSYATTESPVATESARRDAEDRLAVALADQMVTRLIAGAQSW >Mature_159_residues SLFRRRTLLVLLSALPLAACNFQPVYGPGGSGDIIRDQIRVAEPNSRLEFELVSRLEDRLGAGSSYALNYSVSVATRNLA IDETAVINRVNLVGNLNFNVTEVGTGRNVQTATVSTFTSYATTESPVATESARRDAEDRLAVALADQMVTRLIAGAQSW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17293; Mature: 17162
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFRRRTLLVLLSALPLAACNFQPVYGPGGSGDIIRDQIRVAEPNSRLEFELVSRLEDR CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECEEEEECCCCCHHHHHHHHHHHH LGAGSSYALNYSVSVATRNLAIDETAVINRVNLVGNLNFNVTEVGTGRNVQTATVSTFTS HCCCCCEEEEEEEEEEECCEECCHHHHHEEEEEEEECCCEEEECCCCCCEEEEEHHHHHH YATTESPVATESARRDAEDRLAVALADQMVTRLIAGAQSW HCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SLFRRRTLLVLLSALPLAACNFQPVYGPGGSGDIIRDQIRVAEPNSRLEFELVSRLEDR CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECEEEEECCCCCHHHHHHHHHHHH LGAGSSYALNYSVSVATRNLAIDETAVINRVNLVGNLNFNVTEVGTGRNVQTATVSTFTS HCCCCCEEEEEEEEEEECCEECCHHHHHEEEEEEEECCCEEEECCCCCCEEEEEHHHHHH YATTESPVATESARRDAEDRLAVALADQMVTRLIAGAQSW HCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA