Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

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The map label for this gene is 89052887

Identifier: 89052887

GI number: 89052887

Start: 399267

End: 399806

Strand: Direct

Name: 89052887

Synonym: Jann_0396

Alternate gene names: NA

Gene position: 399267-399806 (Clockwise)

Preceding gene: 89052884

Following gene: 89052888

Centisome position: 9.25

GC content: 60.93

Gene sequence:

>540_bases
ATGCCCCCCCGTCACACGAGCGGCTCCTACCAAGCGAAATCCCCAAATGCGCGCCGCCGGCGTGGGTTTGAACGTGCCGT
GACGCTGGTGGGGCCCGAGCTGAAGACGCCCGCCGAAAAGCGCGGATTCGCCGAGACCAAGCTGCTCACCCATTGGGCCG
AGATCGCCGGGCCGGAGATTGCCGATATGGCGGTGCCGGTGAAAGTGAAATTCGGGCGCGGTTTCGGGGGCACGCTGGTT
CTGCTGACCACAGGTGCCAAAGCGCCAATGCTGGAGATGAGCCGCGAGATCATCATCACCCGGGTGAATGCCTGCTACGG
ATATTCGGCCATCAAGGACGTTCAGGTCACTCAGACCGCCCCCACAGGATTTGCGGAGGGGCAGGTGGCCTTCAATGCCT
CCAAACCCAAGGTCAAAGCCACGCCCGATCCGGCACGCATGGAGAAGGCGACAAAAGACCTCGATCATATATCAGACCCG
GTGCTGCGAGACGCCTTGCGAAAGCTCGCCGGAAACATAATTAGTCAGACAAACCGTTAA

Upstream 100 bases:

>100_bases
TCCGATCAGCTGTTCACGCACCCGTTATCCATCCTGTGTGGCTTGCACTTGGTTAGCATCCCGTGAAGGCATAGAGTGCG
CTCAGCCAAAGGATCAACCC

Downstream 100 bases:

>100_bases
GGAGAATCCACATGCAACGCAGAGCCATGTTGTTGGGCGGCGCCACCGGTATTCTGGGCGCGGGCGCCTACCTGCTGTGG
AACGGCAGAGGCGGTCAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MPPRHTSGSYQAKSPNARRRRGFERAVTLVGPELKTPAEKRGFAETKLLTHWAEIAGPEIADMAVPVKVKFGRGFGGTLV
LLTTGAKAPMLEMSREIIITRVNACYGYSAIKDVQVTQTAPTGFAEGQVAFNASKPKVKATPDPARMEKATKDLDHISDP
VLRDALRKLAGNIISQTNR

Sequences:

>Translated_179_residues
MPPRHTSGSYQAKSPNARRRRGFERAVTLVGPELKTPAEKRGFAETKLLTHWAEIAGPEIADMAVPVKVKFGRGFGGTLV
LLTTGAKAPMLEMSREIIITRVNACYGYSAIKDVQVTQTAPTGFAEGQVAFNASKPKVKATPDPARMEKATKDLDHISDP
VLRDALRKLAGNIISQTNR
>Mature_178_residues
PPRHTSGSYQAKSPNARRRRGFERAVTLVGPELKTPAEKRGFAETKLLTHWAEIAGPEIADMAVPVKVKFGRGFGGTLVL
LTTGAKAPMLEMSREIIITRVNACYGYSAIKDVQVTQTAPTGFAEGQVAFNASKPKVKATPDPARMEKATKDLDHISDPV
LRDALRKLAGNIISQTNR

Specific function: Unknown

COG id: COG5389

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19441; Mature: 19309

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPRHTSGSYQAKSPNARRRRGFERAVTLVGPELKTPAEKRGFAETKLLTHWAEIAGPEI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCH
ADMAVPVKVKFGRGFGGTLVLLTTGAKAPMLEMSREIIITRVNACYGYSAIKDVQVTQTA
HHEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHEEEEEHHHHHCCHHHCCEEEECCC
PTGFAEGQVAFNASKPKVKATPDPARMEKATKDLDHISDPVLRDALRKLAGNIISQTNR
CCCCCCCEEEECCCCCCEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PPRHTSGSYQAKSPNARRRRGFERAVTLVGPELKTPAEKRGFAETKLLTHWAEIAGPEI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCH
ADMAVPVKVKFGRGFGGTLVLLTTGAKAPMLEMSREIIITRVNACYGYSAIKDVQVTQTA
HHEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHEEEEEHHHHHCCHHHCCEEEECCC
PTGFAEGQVAFNASKPKVKATPDPARMEKATKDLDHISDPVLRDALRKLAGNIISQTNR
CCCCCCCEEEECCCCCCEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA