| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89052887
Identifier: 89052887
GI number: 89052887
Start: 399267
End: 399806
Strand: Direct
Name: 89052887
Synonym: Jann_0396
Alternate gene names: NA
Gene position: 399267-399806 (Clockwise)
Preceding gene: 89052884
Following gene: 89052888
Centisome position: 9.25
GC content: 60.93
Gene sequence:
>540_bases ATGCCCCCCCGTCACACGAGCGGCTCCTACCAAGCGAAATCCCCAAATGCGCGCCGCCGGCGTGGGTTTGAACGTGCCGT GACGCTGGTGGGGCCCGAGCTGAAGACGCCCGCCGAAAAGCGCGGATTCGCCGAGACCAAGCTGCTCACCCATTGGGCCG AGATCGCCGGGCCGGAGATTGCCGATATGGCGGTGCCGGTGAAAGTGAAATTCGGGCGCGGTTTCGGGGGCACGCTGGTT CTGCTGACCACAGGTGCCAAAGCGCCAATGCTGGAGATGAGCCGCGAGATCATCATCACCCGGGTGAATGCCTGCTACGG ATATTCGGCCATCAAGGACGTTCAGGTCACTCAGACCGCCCCCACAGGATTTGCGGAGGGGCAGGTGGCCTTCAATGCCT CCAAACCCAAGGTCAAAGCCACGCCCGATCCGGCACGCATGGAGAAGGCGACAAAAGACCTCGATCATATATCAGACCCG GTGCTGCGAGACGCCTTGCGAAAGCTCGCCGGAAACATAATTAGTCAGACAAACCGTTAA
Upstream 100 bases:
>100_bases TCCGATCAGCTGTTCACGCACCCGTTATCCATCCTGTGTGGCTTGCACTTGGTTAGCATCCCGTGAAGGCATAGAGTGCG CTCAGCCAAAGGATCAACCC
Downstream 100 bases:
>100_bases GGAGAATCCACATGCAACGCAGAGCCATGTTGTTGGGCGGCGCCACCGGTATTCTGGGCGCGGGCGCCTACCTGCTGTGG AACGGCAGAGGCGGTCAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MPPRHTSGSYQAKSPNARRRRGFERAVTLVGPELKTPAEKRGFAETKLLTHWAEIAGPEIADMAVPVKVKFGRGFGGTLV LLTTGAKAPMLEMSREIIITRVNACYGYSAIKDVQVTQTAPTGFAEGQVAFNASKPKVKATPDPARMEKATKDLDHISDP VLRDALRKLAGNIISQTNR
Sequences:
>Translated_179_residues MPPRHTSGSYQAKSPNARRRRGFERAVTLVGPELKTPAEKRGFAETKLLTHWAEIAGPEIADMAVPVKVKFGRGFGGTLV LLTTGAKAPMLEMSREIIITRVNACYGYSAIKDVQVTQTAPTGFAEGQVAFNASKPKVKATPDPARMEKATKDLDHISDP VLRDALRKLAGNIISQTNR >Mature_178_residues PPRHTSGSYQAKSPNARRRRGFERAVTLVGPELKTPAEKRGFAETKLLTHWAEIAGPEIADMAVPVKVKFGRGFGGTLVL LTTGAKAPMLEMSREIIITRVNACYGYSAIKDVQVTQTAPTGFAEGQVAFNASKPKVKATPDPARMEKATKDLDHISDPV LRDALRKLAGNIISQTNR
Specific function: Unknown
COG id: COG5389
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19441; Mature: 19309
Theoretical pI: Translated: 10.72; Mature: 10.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPRHTSGSYQAKSPNARRRRGFERAVTLVGPELKTPAEKRGFAETKLLTHWAEIAGPEI CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCH ADMAVPVKVKFGRGFGGTLVLLTTGAKAPMLEMSREIIITRVNACYGYSAIKDVQVTQTA HHEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHEEEEEHHHHHCCHHHCCEEEECCC PTGFAEGQVAFNASKPKVKATPDPARMEKATKDLDHISDPVLRDALRKLAGNIISQTNR CCCCCCCEEEECCCCCCEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PPRHTSGSYQAKSPNARRRRGFERAVTLVGPELKTPAEKRGFAETKLLTHWAEIAGPEI CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCH ADMAVPVKVKFGRGFGGTLVLLTTGAKAPMLEMSREIIITRVNACYGYSAIKDVQVTQTA HHEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHEEEEEHHHHHCCHHHCCEEEECCC PTGFAEGQVAFNASKPKVKATPDPARMEKATKDLDHISDPVLRDALRKLAGNIISQTNR CCCCCCCEEEECCCCCCEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA