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The map label for this gene is oprF [H]

Identifier: 89052772

GI number: 89052772

Start: 287215

End: 288162

Strand: Reverse

Name: oprF [H]

Synonym: Jann_0281

Alternate gene names: 89052772

Gene position: 288162-287215 (Counterclockwise)

Preceding gene: 89052773

Following gene: 89052770

Centisome position: 6.67

GC content: 64.03

Gene sequence:

>948_bases
ATGCAGCGATTTGGCCGCACCGCAATGGTCTGCGCGGCGTTCATTTGCCTACCCTCCGCCGGGCAAACGTTTGACCTGAC
CTTCCCCGCGGCGGCAGAGCTTGTGCACATTAGCGATCCCGAGGGTGGCCAACATCCTATCGCCACAGGTCCTTGGTCCG
CCACGTCCGGTGTTCCGACACAAATCGCCAGTGGCGACGTGCAGCAATTCACCTGGCAGGTGACAGGCGTGGATGTCACC
ACGGCTGGTCTGTTGATGACCCTCCGCGAACAGATCGAAGCGCAGGGCTACACCGTGCCGTTCACGTGTTTCGCCAGCGC
GTGCGGTGGCTTCGACTTTCGCCATGCCCTGCCTGTCGGCGCCGCTCCCGAGATGCACGTGGACCTTGGCGATTTCCACT
ACCTCACGGCACTGTCCGAGGATGGAGACACGCGCGCAGCCCTGATGATCTCTCGCGGAGGTGCCATCGGCTTTGTTCAC
CTTGCGCTGATCCAGCCGCCATCGGACCCCGCGCCGGTCATTCAATCGACCCGCGCGCCGGAACCTGGCGTCGATGACAG
CCCTTCCCCCACGGATCTGATCGAGCGACTTAGAACCACGGGCTCCGCGCCCCTCGACGATCTTCAGTTTGAAACAGGCG
CCTCGCAGCTCAGCGGCGAGCGCTACGGCTCCCTCACCGCGCTGGCCGCTTTTCTGGCGGAAGATCCTGCGCGGTCTATC
GTCCTCGTGGGCCACACCGATGCGCTTGGGTCGCTATCCGGCAATATCGCGCTGTCCCGTTCGCGCGCGCTGGCAGTCCT
CCAATTCCTGACAGGGGAGCTTGGCGTCGATCCTGCACAGGTGGAGTTTCAGGGGATCGGGTTCCTGTCCCCCCGCGCGT
CCAACACCACACCTGAAGGCCGGGAGGCCAATCGCAGGGTGGAGGTTGTTCTGACCACCGCCGAGTAA

Upstream 100 bases:

>100_bases
AGGGGGCCCGGCGGCTTTATACTTCCTTGGGGCTCAAACCTGTGGGAACCTACGTCTATCGAGAGGATGCAGGTGGACAG
GCCCGGTGAAAGACGCAGGC

Downstream 100 bases:

>100_bases
TCTGGAAAACAGAGCCTAAACCGCATGTTCGAGACAGTTTTCAGATACACGACCACGTCAAAAAAATCCCGGACGATGCA
CGCAGGCAAGGTCCGGGATG

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MQRFGRTAMVCAAFICLPSAGQTFDLTFPAAAELVHISDPEGGQHPIATGPWSATSGVPTQIASGDVQQFTWQVTGVDVT
TAGLLMTLREQIEAQGYTVPFTCFASACGGFDFRHALPVGAAPEMHVDLGDFHYLTALSEDGDTRAALMISRGGAIGFVH
LALIQPPSDPAPVIQSTRAPEPGVDDSPSPTDLIERLRTTGSAPLDDLQFETGASQLSGERYGSLTALAAFLAEDPARSI
VLVGHTDALGSLSGNIALSRSRALAVLQFLTGELGVDPAQVEFQGIGFLSPRASNTTPEGREANRRVEVVLTTAE

Sequences:

>Translated_315_residues
MQRFGRTAMVCAAFICLPSAGQTFDLTFPAAAELVHISDPEGGQHPIATGPWSATSGVPTQIASGDVQQFTWQVTGVDVT
TAGLLMTLREQIEAQGYTVPFTCFASACGGFDFRHALPVGAAPEMHVDLGDFHYLTALSEDGDTRAALMISRGGAIGFVH
LALIQPPSDPAPVIQSTRAPEPGVDDSPSPTDLIERLRTTGSAPLDDLQFETGASQLSGERYGSLTALAAFLAEDPARSI
VLVGHTDALGSLSGNIALSRSRALAVLQFLTGELGVDPAQVEFQGIGFLSPRASNTTPEGREANRRVEVVLTTAE
>Mature_315_residues
MQRFGRTAMVCAAFICLPSAGQTFDLTFPAAAELVHISDPEGGQHPIATGPWSATSGVPTQIASGDVQQFTWQVTGVDVT
TAGLLMTLREQIEAQGYTVPFTCFASACGGFDFRHALPVGAAPEMHVDLGDFHYLTALSEDGDTRAALMISRGGAIGFVH
LALIQPPSDPAPVIQSTRAPEPGVDDSPSPTDLIERLRTTGSAPLDDLQFETGASQLSGERYGSLTALAAFLAEDPARSI
VLVGHTDALGSLSGNIALSRSRALAVLQFLTGELGVDPAQVEFQGIGFLSPRASNTTPEGREANRRVEVVLTTAE

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=107, Percent_Identity=35.5140186915888, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 33048; Mature: 33048

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRFGRTAMVCAAFICLPSAGQTFDLTFPAAAELVHISDPEGGQHPIATGPWSATSGVPT
CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
QIASGDVQQFTWQVTGVDVTTAGLLMTLREQIEAQGYTVPFTCFASACGGFDFRHALPVG
HHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCHHHCCCCC
AAPEMHVDLGDFHYLTALSEDGDTRAALMISRGGAIGFVHLALIQPPSDPAPVIQSTRAP
CCCCEEEECCCEEEEEEECCCCCCEEEEEEECCCCEEEEEEEEECCCCCCHHHHHCCCCC
EPGVDDSPSPTDLIERLRTTGSAPLDDLQFETGASQLSGERYGSLTALAAFLAEDPARSI
CCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCHHHHCCCCCCHHHHHHHHHHCCCCCEE
VLVGHTDALGSLSGNIALSRSRALAVLQFLTGELGVDPAQVEFQGIGFLSPRASNTTPEG
EEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECEEECCCCCCCCCCC
REANRRVEVVLTTAE
CCCCCEEEEEEEECC
>Mature Secondary Structure
MQRFGRTAMVCAAFICLPSAGQTFDLTFPAAAELVHISDPEGGQHPIATGPWSATSGVPT
CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
QIASGDVQQFTWQVTGVDVTTAGLLMTLREQIEAQGYTVPFTCFASACGGFDFRHALPVG
HHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCHHHCCCCC
AAPEMHVDLGDFHYLTALSEDGDTRAALMISRGGAIGFVHLALIQPPSDPAPVIQSTRAP
CCCCEEEECCCEEEEEEECCCCCCEEEEEEECCCCEEEEEEEEECCCCCCHHHHHCCCCC
EPGVDDSPSPTDLIERLRTTGSAPLDDLQFETGASQLSGERYGSLTALAAFLAEDPARSI
CCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCHHHHCCCCCCHHHHHHHHHHCCCCCEE
VLVGHTDALGSLSGNIALSRSRALAVLQFLTGELGVDPAQVEFQGIGFLSPRASNTTPEG
EEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECEEECCCCCCCCCCC
REANRRVEVVLTTAE
CCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]