| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89052730
Identifier: 89052730
GI number: 89052730
Start: 233800
End: 234648
Strand: Direct
Name: 89052730
Synonym: Jann_0239
Alternate gene names: NA
Gene position: 233800-234648 (Clockwise)
Preceding gene: 89052727
Following gene: 89052732
Centisome position: 5.41
GC content: 47.35
Gene sequence:
>849_bases ATGACGGTGTGCGTTGCGGTTAAGGTGCAGGATTGCATCGTGTTTGCTGCTGATAGCACCACCTCCCTACAAGCTGTTGG AGCCAACGGCGAACATGTGACCATGAACACATACGATCATGCAAACAAACTCTTTAATCTGAGAAAGGGATGCCCTGTCG CTGCCATGACGGCAGGGATTGGTAACTTTGGAGGATCTTCCATCTCTACGGTGTCCAAAGATTTTCGATCCCTTATTGAT CGGCGTGCAGAGGGATATGCTTTGAACTGGGAGAACTACACAATTGAAGAAATTGTTGGCCTGGCGCGTAAGTACTTCTT TGAAGAGCGCTTCTCTTCACTTTCAGAGAAGCCTCAAGGAAGTTTTCAATACTGGGTTGGCGGCTATTCTTCTGGAGAAC AAATGGGCGAAGTTTGGCAATTTCAGATTCATAATGGAGAATGCTTAGAGCCACAGTGTTCAATTTCACGTAATGTCGCA TCTGGTCTTGCATGGGGTGGTGCACCAGAGGCCATAAATCGCTTGATCCTAGGATATGGACAGCGGATCGGCGATGCTTT GGTTGAGGGAGGGCTTGATGCCTCCCTTGTTCCACAGGCCATTGATGGAATTGCGCGATATACCCAATGCTCACTTGTAC ATGCAGCGATGCCGACTGGGGATGCGATTGATCTTGCAAAATTTCTAGCCGAAACGACCAAGCAATTTGTCAGATTCATG CCTGGTAGTAATTCAGTGGGTGGCGACCTCGATATTGCCACAATCACTAAGCATGAAAATTTTAAGTGGATCGCAAGAAA GCACTTCTACAATACTCGCATCAATCCATTGGAGACCAACCATGCCTAA
Upstream 100 bases:
>100_bases CATGGACTGAATGTCCAAGTCATTGATGCTGAGTCCTTTTTCTGTCGTTGCCCGCAGGCGAGAGAAATGATTCACTTGCG GTAGCCAGAGGGGGATCAAA
Downstream 100 bases:
>100_bases TCTAAACGATGGAACAACAAGAGCGCTTACGGTAGATCCGCAGCCTCGGCGAGACTTGACCATGCCTCCTATGGTTTCAT CTCGTACTGATAGTGCATCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 282; Mature: 281
Protein sequence:
>282_residues MTVCVAVKVQDCIVFAADSTTSLQAVGANGEHVTMNTYDHANKLFNLRKGCPVAAMTAGIGNFGGSSISTVSKDFRSLID RRAEGYALNWENYTIEEIVGLARKYFFEERFSSLSEKPQGSFQYWVGGYSSGEQMGEVWQFQIHNGECLEPQCSISRNVA SGLAWGGAPEAINRLILGYGQRIGDALVEGGLDASLVPQAIDGIARYTQCSLVHAAMPTGDAIDLAKFLAETTKQFVRFM PGSNSVGGDLDIATITKHENFKWIARKHFYNTRINPLETNHA
Sequences:
>Translated_282_residues MTVCVAVKVQDCIVFAADSTTSLQAVGANGEHVTMNTYDHANKLFNLRKGCPVAAMTAGIGNFGGSSISTVSKDFRSLID RRAEGYALNWENYTIEEIVGLARKYFFEERFSSLSEKPQGSFQYWVGGYSSGEQMGEVWQFQIHNGECLEPQCSISRNVA SGLAWGGAPEAINRLILGYGQRIGDALVEGGLDASLVPQAIDGIARYTQCSLVHAAMPTGDAIDLAKFLAETTKQFVRFM PGSNSVGGDLDIATITKHENFKWIARKHFYNTRINPLETNHA >Mature_281_residues TVCVAVKVQDCIVFAADSTTSLQAVGANGEHVTMNTYDHANKLFNLRKGCPVAAMTAGIGNFGGSSISTVSKDFRSLIDR RAEGYALNWENYTIEEIVGLARKYFFEERFSSLSEKPQGSFQYWVGGYSSGEQMGEVWQFQIHNGECLEPQCSISRNVAS GLAWGGAPEAINRLILGYGQRIGDALVEGGLDASLVPQAIDGIARYTQCSLVHAAMPTGDAIDLAKFLAETTKQFVRFMP GSNSVGGDLDIATITKHENFKWIARKHFYNTRINPLETNHA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30805; Mature: 30674
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVCVAVKVQDCIVFAADSTTSLQAVGANGEHVTMNTYDHANKLFNLRKGCPVAAMTAGI CEEEEEEEEEEEEEEECCCCCEEEEECCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHCC GNFGGSSISTVSKDFRSLIDRRAEGYALNWENYTIEEIVGLARKYFFEERFSSLSEKPQG CCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC SFQYWVGGYSSGEQMGEVWQFQIHNGECLEPQCSISRNVASGLAWGGAPEAINRLILGYG CEEEEECCCCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH QRIGDALVEGGLDASLVPQAIDGIARYTQCSLVHAAMPTGDAIDLAKFLAETTKQFVRFM HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC PGSNSVGGDLDIATITKHENFKWIARKHFYNTRINPLETNHA CCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure TVCVAVKVQDCIVFAADSTTSLQAVGANGEHVTMNTYDHANKLFNLRKGCPVAAMTAGI EEEEEEEEEEEEEEECCCCCEEEEECCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHCC GNFGGSSISTVSKDFRSLIDRRAEGYALNWENYTIEEIVGLARKYFFEERFSSLSEKPQG CCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC SFQYWVGGYSSGEQMGEVWQFQIHNGECLEPQCSISRNVASGLAWGGAPEAINRLILGYG CEEEEECCCCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH QRIGDALVEGGLDASLVPQAIDGIARYTQCSLVHAAMPTGDAIDLAKFLAETTKQFVRFM HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC PGSNSVGGDLDIATITKHENFKWIARKHFYNTRINPLETNHA CCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA