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The map label for this gene is yhbH [C]

Identifier: 89052715

GI number: 89052715

Start: 219780

End: 220487

Strand: Reverse

Name: yhbH [C]

Synonym: Jann_0224

Alternate gene names: 89052715

Gene position: 220487-219780 (Counterclockwise)

Preceding gene: 89052716

Following gene: 89052714

Centisome position: 5.11

GC content: 56.5

Gene sequence:

>708_bases
ATGCTTCATCTCCCAGTGCCTCGCACGGTATGCCGACCTTTCGACTGCCCCAGCGCACTCTCTCTGACATCCAAAATCAT
CAAGTTAACAGACACGGCGCCTGCGTCGTGCACCCTTAAAACCGGAGGTTACATGCGGTATCAGATCAGCGGAAAACAGA
TCGAAATCGGCCAGGCGCTGCAAACTCACGTTCAGGACAATCTGGGCGGTATTGCCCAGAAATACGCGGAGCGTCCCACC
GATGCGACCGTCGTCTTTTCCAAATCCGGGCCAGAGTTTGCGTGTGAAACCACGGTTCATCTGTCGACTGGTCTGACTGC
CTCCGCGAAGGCCCATGCCCATGAAATCTATGCCGCGTTCGAGGCCACGGCCGATAAGCTGGAAAAACAGCTAAGGCGAT
ACAAAAGACGCCTAAAAGATCACCACAAAGACCGCGCGACCCCCATTGATGTCTATGGCGGGGCCTCTTATATCCTCGCC
TCATCGGAGGCCGCAGTGGACGATGCGGAGCCGGAGACGTTGCAGCCAATCATCGTGGCCGAGATGGAAACCAGTATCCC
ATCGCTTTCGGTCGGAGAGGCCGTGATGCAAATGGAGATTGCGGGCGCACCCCTGTTGGTGTTCCGCGAGCAAGGGAACG
ACAGGGTGAACGTGGTCTACCGCCGGGATGACGGTAATGTGGGCTGGATTGATCCAAAAACTACCTGA

Upstream 100 bases:

>100_bases
CGTCTATCTTGGCCAATCTTTCAAGATTACCTGACCGTGCGCGCGCGGTTTAGATTGACTCACCGCCGCAATCCTCGTCT
GATGTTGGGGATGGTTGCGA

Downstream 100 bases:

>100_bases
AGAACAGGGCCCGGGTCAGGCATGCAGCCCCCGGGCCGACCAACGATTGGCTTCGGCCATGGGCGGGGGACACCGGAATG
GACCTATCAACTCTTCTGAC

Product: sigma 54 modulation protein / SSU ribosomal protein S30P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MLHLPVPRTVCRPFDCPSALSLTSKIIKLTDTAPASCTLKTGGYMRYQISGKQIEIGQALQTHVQDNLGGIAQKYAERPT
DATVVFSKSGPEFACETTVHLSTGLTASAKAHAHEIYAAFEATADKLEKQLRRYKRRLKDHHKDRATPIDVYGGASYILA
SSEAAVDDAEPETLQPIIVAEMETSIPSLSVGEAVMQMEIAGAPLLVFREQGNDRVNVVYRRDDGNVGWIDPKTT

Sequences:

>Translated_235_residues
MLHLPVPRTVCRPFDCPSALSLTSKIIKLTDTAPASCTLKTGGYMRYQISGKQIEIGQALQTHVQDNLGGIAQKYAERPT
DATVVFSKSGPEFACETTVHLSTGLTASAKAHAHEIYAAFEATADKLEKQLRRYKRRLKDHHKDRATPIDVYGGASYILA
SSEAAVDDAEPETLQPIIVAEMETSIPSLSVGEAVMQMEIAGAPLLVFREQGNDRVNVVYRRDDGNVGWIDPKTT
>Mature_235_residues
MLHLPVPRTVCRPFDCPSALSLTSKIIKLTDTAPASCTLKTGGYMRYQISGKQIEIGQALQTHVQDNLGGIAQKYAERPT
DATVVFSKSGPEFACETTVHLSTGLTASAKAHAHEIYAAFEATADKLEKQLRRYKRRLKDHHKDRATPIDVYGGASYILA
SSEAAVDDAEPETLQPIIVAEMETSIPSLSVGEAVMQMEIAGAPLLVFREQGNDRVNVVYRRDDGNVGWIDPKTT

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 25657; Mature: 25657

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHLPVPRTVCRPFDCPSALSLTSKIIKLTDTAPASCTLKTGGYMRYQISGKQIEIGQAL
CCCCCCCHHHCCCCCCCHHHHHHHHHEEEECCCCCEEEEECCCEEEEEECCCEEEHHHHH
QTHVQDNLGGIAQKYAERPTDATVVFSKSGPEFACETTVHLSTGLTASAKAHAHEIYAAF
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHH
EATADKLEKQLRRYKRRLKDHHKDRATPIDVYGGASYILASSEAAVDDAEPETLQPIIVA
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEE
EMETSIPSLSVGEAVMQMEIAGAPLLVFREQGNDRVNVVYRRDDGNVGWIDPKTT
EECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCCEECCCCCCC
>Mature Secondary Structure
MLHLPVPRTVCRPFDCPSALSLTSKIIKLTDTAPASCTLKTGGYMRYQISGKQIEIGQAL
CCCCCCCHHHCCCCCCCHHHHHHHHHEEEECCCCCEEEEECCCEEEEEECCCEEEHHHHH
QTHVQDNLGGIAQKYAERPTDATVVFSKSGPEFACETTVHLSTGLTASAKAHAHEIYAAF
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHH
EATADKLEKQLRRYKRRLKDHHKDRATPIDVYGGASYILASSEAAVDDAEPETLQPIIVA
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEE
EMETSIPSLSVGEAVMQMEIAGAPLLVFREQGNDRVNVVYRRDDGNVGWIDPKTT
EECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430; 3034856 [H]