Click here to switch to the map view.

The map label for this gene is pufM [H]

Identifier: 89052663

GI number: 89052663

Start: 165606

End: 166604

Strand: Reverse

Name: pufM [H]

Synonym: Jann_0172

Alternate gene names: 89052663

Gene position: 166604-165606 (Counterclockwise)

Preceding gene: 89052664

Following gene: 89052662

Centisome position: 3.86

GC content: 60.06

Gene sequence:

>999_bases
ATGGCTTACTTCGAATACCAGAATATCTTTACCCAGGTCCAGGTTCAGGGTGAGCCCGAAATGGGGATGGATGATCAGGG
AACGCTGATGCGCGAACGCACAGGCGCTTCGTTTTCGACCCTGATCGGCTGGATCGGCAACGCACAGCTTGGCCCGATCT
ACCTCGGCTATGCCGGTCTGATCAGCCTTGCCACCGGTGCGGCCTGGTTCATGATTGTAGGCTTCAACATGCTGTCCCAT
GTCGATTGGTCCCTGCCGGAGTTCATTCGCCAGCTGTTCTGGCTGTCGCTAGAGCCGCCCGGACCCGAATGGGGCCTGCG
GATGCCGCCGCTCAACGATGGCGGGTGGTACATCATCTCCAGTTTCTTCCTGCTGGTCTCGGTGATGTTCTGGTGGTTGC
GCACCTACATGCTGGCCGTCGAGCATCAGATGGGCAAACATATCGCCTGGGCGTTTCTCGCTGCAATCTGGCTGTTCCTT
GTGCTGGGTCTCTTCCGCCCGATCCTGATGGGATCGTGGAGTGAAGCCGTTCCCTACGGCATCTTCCCGCACCTGGATTG
GACGACAGCGTTTTCCATCCGCTACGGCAACCTCTACTACAACCCGTTCCATTGCCTCTCGATCGTGTTCCTCTATGGCT
CGGTCCTGTTGTTCGCCATGCACGGCGCGACGATCCTGGCTGTGTCCCGCTACGGCGGCGACAGGGAGTTGGAGCAGATC
GTGGACCGCGGCACTGCGTCCGAGCGAGCTGGCCTGTTCTGGCGCTGGACCATGGGCTTCAACGCCACGATGGAAGGCAT
CCACAGATGGGCCTGGTGGTTCGCGGTGCTGACCCCGATCACTGGCGGCATCGGCATCCTGTTGACCGGAACCGTCGTGG
ATAACTGGTTCATCTGGGCCCAGGAACACAACTTCGCACCCGACTATCTGGGCGCCTATGGCTACGAGGCCTACGGCTCT
TACGAGGACTTCGGCGGCGTCACACGAGGGGAGGAGTAA

Upstream 100 bases:

>100_bases
TGCCGATCTGGCCGGATCAGGGCGTCGCATATGACACGACCGGTATGGCCACTTACGGCACCGAGGCAGGCTACGCCGAC
GTCACTGGGGGGACCGAATA

Downstream 100 bases:

>100_bases
TCAATGTTTCCCAAGTGGTTTGATAAGTGGAATGACGACAATCCCACTAACATCTTTGGCCCCGCGATAGCTGTTGGTGC
CCTGGGCGGCGCGGTCTTTG

Product: photosynthetic reaction center subunit M

Products: NA

Alternate protein names: Photosynthetic reaction center M subunit [H]

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MAYFEYQNIFTQVQVQGEPEMGMDDQGTLMRERTGASFSTLIGWIGNAQLGPIYLGYAGLISLATGAAWFMIVGFNMLSH
VDWSLPEFIRQLFWLSLEPPGPEWGLRMPPLNDGGWYIISSFFLLVSVMFWWLRTYMLAVEHQMGKHIAWAFLAAIWLFL
VLGLFRPILMGSWSEAVPYGIFPHLDWTTAFSIRYGNLYYNPFHCLSIVFLYGSVLLFAMHGATILAVSRYGGDRELEQI
VDRGTASERAGLFWRWTMGFNATMEGIHRWAWWFAVLTPITGGIGILLTGTVVDNWFIWAQEHNFAPDYLGAYGYEAYGS
YEDFGGVTRGEE

Sequences:

>Translated_332_residues
MAYFEYQNIFTQVQVQGEPEMGMDDQGTLMRERTGASFSTLIGWIGNAQLGPIYLGYAGLISLATGAAWFMIVGFNMLSH
VDWSLPEFIRQLFWLSLEPPGPEWGLRMPPLNDGGWYIISSFFLLVSVMFWWLRTYMLAVEHQMGKHIAWAFLAAIWLFL
VLGLFRPILMGSWSEAVPYGIFPHLDWTTAFSIRYGNLYYNPFHCLSIVFLYGSVLLFAMHGATILAVSRYGGDRELEQI
VDRGTASERAGLFWRWTMGFNATMEGIHRWAWWFAVLTPITGGIGILLTGTVVDNWFIWAQEHNFAPDYLGAYGYEAYGS
YEDFGGVTRGEE
>Mature_331_residues
AYFEYQNIFTQVQVQGEPEMGMDDQGTLMRERTGASFSTLIGWIGNAQLGPIYLGYAGLISLATGAAWFMIVGFNMLSHV
DWSLPEFIRQLFWLSLEPPGPEWGLRMPPLNDGGWYIISSFFLLVSVMFWWLRTYMLAVEHQMGKHIAWAFLAAIWLFLV
LGLFRPILMGSWSEAVPYGIFPHLDWTTAFSIRYGNLYYNPFHCLSIVFLYGSVLLFAMHGATILAVSRYGGDRELEQIV
DRGTASERAGLFWRWTMGFNATMEGIHRWAWWFAVLTPITGGIGILLTGTVVDNWFIWAQEHNFAPDYLGAYGYEAYGSY
EDFGGVTRGEE

Specific function: The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular chromatophore membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005781 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 37821; Mature: 37690

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYFEYQNIFTQVQVQGEPEMGMDDQGTLMRERTGASFSTLIGWIGNAQLGPIYLGYAGL
CCEEHHHHHEEEEEECCCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCEEEHHHHH
ISLATGAAWFMIVGFNMLSHVDWSLPEFIRQLFWLSLEPPGPEWGLRMPPLNDGGWYIIS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCHHHHH
SFFLLVSVMFWWLRTYMLAVEHQMGKHIAWAFLAAIWLFLVLGLFRPILMGSWSEAVPYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCC
IFPHLDWTTAFSIRYGNLYYNPFHCLSIVFLYGSVLLFAMHGATILAVSRYGGDRELEQI
CCCCCCCEEEEEEEECCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
VDRGTASERAGLFWRWTMGFNATMEGIHRWAWWFAVLTPITGGIGILLTGTVVDNWFIWA
HHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECEEEEE
QEHNFAPDYLGAYGYEAYGSYEDFGGVTRGEE
ECCCCCCHHHHCCCCHHCCCHHHHCCCCCCCC
>Mature Secondary Structure 
AYFEYQNIFTQVQVQGEPEMGMDDQGTLMRERTGASFSTLIGWIGNAQLGPIYLGYAGL
CEEHHHHHEEEEEECCCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCEEEHHHHH
ISLATGAAWFMIVGFNMLSHVDWSLPEFIRQLFWLSLEPPGPEWGLRMPPLNDGGWYIIS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCHHHHH
SFFLLVSVMFWWLRTYMLAVEHQMGKHIAWAFLAAIWLFLVLGLFRPILMGSWSEAVPYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCC
IFPHLDWTTAFSIRYGNLYYNPFHCLSIVFLYGSVLLFAMHGATILAVSRYGGDRELEQI
CCCCCCCEEEEEEEECCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
VDRGTASERAGLFWRWTMGFNATMEGIHRWAWWFAVLTPITGGIGILLTGTVVDNWFIWA
HHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECEEEEE
QEHNFAPDYLGAYGYEAYGSYEDFGGVTRGEE
ECCCCCCHHHHCCCCHHCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1787796 [H]