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The map label for this gene is crtJ [H]

Identifier: 89052655

GI number: 89052655

Start: 156490

End: 157938

Strand: Direct

Name: crtJ [H]

Synonym: Jann_0164

Alternate gene names: 89052655

Gene position: 156490-157938 (Clockwise)

Preceding gene: 89052654

Following gene: 89052656

Centisome position: 3.62

GC content: 59.9

Gene sequence:

>1449_bases
ATGAACACGCGCGGAACAGATTTTTGGGATAAACCCTCGTCGCCTCCGATTGGGCCCGAGCAGTTTAGCGAGATTGTGAC
CACGGCAGCGGATCTGGCCATTGTGCTGGATACGGGCGGCAAGGTTCATTCTGTCGTCACCAACCCGCTGAACCCCACCC
TTGGACAGCTTGATCATTGGAAGGATCGCGATATCCGCGAGTTCCTGACGATTGAAAGCCTGCCCAAGATCGACGCACAG
CTCAGCGCCTATCGGGACGGTGTGCCCGCCAAGGTTGATGCGATTGAGGTGAACCATTCCGACAATGCGGATTGGGAATT
TCCGATCCGATACACGCTGCACAAGACAAGCCGCGATGACATCATCCTTATGCTTGGCCGCGATCTGCGCCCGATTGCGG
AATTGCAGCACCGGCTGGTGAAGGCGCAGCTGGCGCTGGAAAAAGACTACGAGTCGCACCGGGATTATGAAACGCGCTAC
CGTGTGATCATGGAAGCGGCGCGCGATGCGATGGCGCTGGTCGATGTCGCGTCTGGCCGGATCGTCGATGTGAACGGGCT
TGGCGCGCAAATTCTGGGCACGGACGCGGAGGCCCTGACCGGTGCCGCCTTTACCCAGGAATTTGAAGGGCGTCGCCGGG
GCGAGTTTATCGAAGGCCTGGTGAATGCGGCCAGTGATGAGGCGTCTCAGGTCGTGACCGTGAAGACGCGCCGAACGCAG
GCCGATGTCGTACTTCATCCGCTGGTCTTCCGCGCCGCTGGCGACCGGACGCTTTTGTGCCGGATTGAAACGGCAGGCAC
GGCCGAGACGGTTGCGGCCGAACTGGCGCAGGTCTTGTCCGCCCTCTACCGCGATGGGGCCGATGCGATTGTGTTCACCG
ACGCCGTTGGCATCATCCGGTCGGCCAATGATGCCTTCCTCAGCCTGTGCGACGCCGGGCAGATTGGCGATGTGCGGGGC
AAGTCCATTGCCGAATTTCTGTCGCGCGGCTCTGTCGACCTGAAAGTTCTGATCGACAACGCCACACGCAACAAGAAGAT
GCGGCTTTATTCCACGCGTCTGGACGGGGCCTTTGGGTCGCAATTGTCGGTGGAGATGTCTGCGACCTTGCTGAACAGCG
GCGGCACCACGGGCTTTGCCTTCGTCGTGCGCGACATAAGCCGGATTGAGGTTGTGCGGGAACCTGCATCGGCAACGCCA
TCGGCCATGTCAGACGACGCGATGCGCAACGTGATGGATCTTGTGGGCTCTGCGCCGTTGAAAGATATCGTGTCGGCCAC
CACAGATGTGGTGGAGAAGATGTGCATCGAGACTGCCGTTGAACTGACCGACAACAACCGCGTCGCAGCGGCGGAAATGC
TGGGCCTGTCGCGTCAGTCGCTTTACGTCAAACTGCGCAAATATGGGCTTTTGGCGAAGAACGATTCCGGCACGTCTGGC
AAGGCGTAA

Upstream 100 bases:

>100_bases
ACTATGTGGTTTGAACATTGTGGAGTTAGACCCTCCCCGAGAATTGATGGCCGACCACGTTTAAATAGAATGAACGATCT
GTGACGGAGAACATGTTCGC

Downstream 100 bases:

>100_bases
ACCTGAGTTTACACTTGCCGACTCGACAGGTGTCAGCCTAAGCTGACACTTATGAGTGTAACGACCGACCTCACACAACC
GAGTGCTTTACGCCGGGTGC

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MNTRGTDFWDKPSSPPIGPEQFSEIVTTAADLAIVLDTGGKVHSVVTNPLNPTLGQLDHWKDRDIREFLTIESLPKIDAQ
LSAYRDGVPAKVDAIEVNHSDNADWEFPIRYTLHKTSRDDIILMLGRDLRPIAELQHRLVKAQLALEKDYESHRDYETRY
RVIMEAARDAMALVDVASGRIVDVNGLGAQILGTDAEALTGAAFTQEFEGRRRGEFIEGLVNAASDEASQVVTVKTRRTQ
ADVVLHPLVFRAAGDRTLLCRIETAGTAETVAAELAQVLSALYRDGADAIVFTDAVGIIRSANDAFLSLCDAGQIGDVRG
KSIAEFLSRGSVDLKVLIDNATRNKKMRLYSTRLDGAFGSQLSVEMSATLLNSGGTTGFAFVVRDISRIEVVREPASATP
SAMSDDAMRNVMDLVGSAPLKDIVSATTDVVEKMCIETAVELTDNNRVAAAEMLGLSRQSLYVKLRKYGLLAKNDSGTSG
KA

Sequences:

>Translated_482_residues
MNTRGTDFWDKPSSPPIGPEQFSEIVTTAADLAIVLDTGGKVHSVVTNPLNPTLGQLDHWKDRDIREFLTIESLPKIDAQ
LSAYRDGVPAKVDAIEVNHSDNADWEFPIRYTLHKTSRDDIILMLGRDLRPIAELQHRLVKAQLALEKDYESHRDYETRY
RVIMEAARDAMALVDVASGRIVDVNGLGAQILGTDAEALTGAAFTQEFEGRRRGEFIEGLVNAASDEASQVVTVKTRRTQ
ADVVLHPLVFRAAGDRTLLCRIETAGTAETVAAELAQVLSALYRDGADAIVFTDAVGIIRSANDAFLSLCDAGQIGDVRG
KSIAEFLSRGSVDLKVLIDNATRNKKMRLYSTRLDGAFGSQLSVEMSATLLNSGGTTGFAFVVRDISRIEVVREPASATP
SAMSDDAMRNVMDLVGSAPLKDIVSATTDVVEKMCIETAVELTDNNRVAAAEMLGLSRQSLYVKLRKYGLLAKNDSGTSG
KA
>Mature_482_residues
MNTRGTDFWDKPSSPPIGPEQFSEIVTTAADLAIVLDTGGKVHSVVTNPLNPTLGQLDHWKDRDIREFLTIESLPKIDAQ
LSAYRDGVPAKVDAIEVNHSDNADWEFPIRYTLHKTSRDDIILMLGRDLRPIAELQHRLVKAQLALEKDYESHRDYETRY
RVIMEAARDAMALVDVASGRIVDVNGLGAQILGTDAEALTGAAFTQEFEGRRRGEFIEGLVNAASDEASQVVTVKTRRTQ
ADVVLHPLVFRAAGDRTLLCRIETAGTAETVAAELAQVLSALYRDGADAIVFTDAVGIIRSANDAFLSLCDAGQIGDVRG
KSIAEFLSRGSVDLKVLIDNATRNKKMRLYSTRLDGAFGSQLSVEMSATLLNSGGTTGFAFVVRDISRIEVVREPASATP
SAMSDDAMRNVMDLVGSAPLKDIVSATTDVVEKMCIETAVELTDNNRVAAAEMLGLSRQSLYVKLRKYGLLAKNDSGTSG
KA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR011785 [H]

Pfam domain/function: PF02954 HTH_8 [H]

EC number: NA

Molecular weight: Translated: 52346; Mature: 52346

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRGTDFWDKPSSPPIGPEQFSEIVTTAADLAIVLDTGGKVHSVVTNPLNPTLGQLDHW
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCEEEEEECCCCEEEEECCCCCCCHHCCCCC
KDRDIREFLTIESLPKIDAQLSAYRDGVPAKVDAIEVNHSDNADWEFPIRYTLHKTSRDD
CCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCC
IILMLGRDLRPIAELQHRLVKAQLALEKDYESHRDYETRYRVIMEAARDAMALVDVASGR
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEECCCC
IVDVNGLGAQILGTDAEALTGAAFTQEFEGRRRGEFIEGLVNAASDEASQVVTVKTRRTQ
EEEECCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCC
ADVVLHPLVFRAAGDRTLLCRIETAGTAETVAAELAQVLSALYRDGADAIVFTDAVGIIR
CHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH
SANDAFLSLCDAGQIGDVRGKSIAEFLSRGSVDLKVLIDNATRNKKMRLYSTRLDGAFGS
CCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCCC
QLSVEMSATLLNSGGTTGFAFVVRDISRIEVVREPASATPSAMSDDAMRNVMDLVGSAPL
CEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCH
KDIVSATTDVVEKMCIETAVELTDNNRVAAAEMLGLSRQSLYVKLRKYGLLAKNDSGTSG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHHHHHHCCEEECCCCCCC
KA
CC
>Mature Secondary Structure
MNTRGTDFWDKPSSPPIGPEQFSEIVTTAADLAIVLDTGGKVHSVVTNPLNPTLGQLDHW
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCEEEEEECCCCEEEEECCCCCCCHHCCCCC
KDRDIREFLTIESLPKIDAQLSAYRDGVPAKVDAIEVNHSDNADWEFPIRYTLHKTSRDD
CCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCC
IILMLGRDLRPIAELQHRLVKAQLALEKDYESHRDYETRYRVIMEAARDAMALVDVASGR
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEECCCC
IVDVNGLGAQILGTDAEALTGAAFTQEFEGRRRGEFIEGLVNAASDEASQVVTVKTRRTQ
EEEECCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCC
ADVVLHPLVFRAAGDRTLLCRIETAGTAETVAAELAQVLSALYRDGADAIVFTDAVGIIR
CHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH
SANDAFLSLCDAGQIGDVRGKSIAEFLSRGSVDLKVLIDNATRNKKMRLYSTRLDGAFGS
CCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCCC
QLSVEMSATLLNSGGTTGFAFVVRDISRIEVVREPASATPSAMSDDAMRNVMDLVGSAPL
CEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCH
KDIVSATTDVVEKMCIETAVELTDNNRVAAAEMLGLSRQSLYVKLRKYGLLAKNDSGTSG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHHHHHHCCEEECCCCCCC
KA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA