| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89052607
Identifier: 89052607
GI number: 89052607
Start: 106435
End: 106848
Strand: Reverse
Name: 89052607
Synonym: Jann_0116
Alternate gene names: NA
Gene position: 106848-106435 (Counterclockwise)
Preceding gene: 89052608
Following gene: 89052605
Centisome position: 2.47
GC content: 64.25
Gene sequence:
>414_bases ATGACCCGCCTGATTGCCCTGCCTCTTCTTGCCCTCGCCCTGCCCGCGCAGGCTGAGCTGCCGCCTTGCGTGAGTGATGA TCTGATGCGCCAGGCATCTCTGGTGGTGCAGATCACCGACCCGTCGGTCGAGACCTTTGCCAACAACATCTGCCGGATCA GCGGCACGATAGTGCAGGTGCATCGCGGGGCGGCGAATGTCGGGCAAAGCCTGACGGCGACGTTTGATTGCCTGATCGAC CCGTCTCAGGCCGTCATCGGCGGCACCGTTTACAGTGACCCCGATGCGCTGGCCCGTGCCGGTGCGGTGGAGGTTCACAT CGGCTCTGACGGCTACGTTGCCGCCAATGGCGCGGGCCTGATCGCGCTGAATGCCCCCACACAACGCATCGCGTGGGAGC CGTATTGTAGCTAG
Upstream 100 bases:
>100_bases GGCTGTGTACGCGTTCGCGCAGGAGGCCTGAGGGCTGGAATCCCACCATCGACGGAGGTGCGGACCCTGGTCATTCTGGG ATGACCGGAAGGAGATCCCC
Downstream 100 bases:
>100_bases GACTTAGGCCGCTTTGGACCGGCGAGGCCGACGGGGTTTTCGCGGCTGGCCGTTGCCACCGCCACCACCGCCTTTGCCCT GGGGCTTACGGTTGCCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 137; Mature: 136
Protein sequence:
>137_residues MTRLIALPLLALALPAQAELPPCVSDDLMRQASLVVQITDPSVETFANNICRISGTIVQVHRGAANVGQSLTATFDCLID PSQAVIGGTVYSDPDALARAGAVEVHIGSDGYVAANGAGLIALNAPTQRIAWEPYCS
Sequences:
>Translated_137_residues MTRLIALPLLALALPAQAELPPCVSDDLMRQASLVVQITDPSVETFANNICRISGTIVQVHRGAANVGQSLTATFDCLID PSQAVIGGTVYSDPDALARAGAVEVHIGSDGYVAANGAGLIALNAPTQRIAWEPYCS >Mature_136_residues TRLIALPLLALALPAQAELPPCVSDDLMRQASLVVQITDPSVETFANNICRISGTIVQVHRGAANVGQSLTATFDCLIDP SQAVIGGTVYSDPDALARAGAVEVHIGSDGYVAANGAGLIALNAPTQRIAWEPYCS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14214; Mature: 14083
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRLIALPLLALALPAQAELPPCVSDDLMRQASLVVQITDPSVETFANNICRISGTIVQV CCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCEEEEEEECCCCHHHHHCCEEEECCEEEEE HRGAANVGQSLTATFDCLIDPSQAVIGGTVYSDPDALARAGAVEVHIGSDGYVAANGAGL ECCCHHCCCCCEEEEEEEECCCCCEECCEEECCCHHHHHCCEEEEEECCCCEEEECCCEE IALNAPTQRIAWEPYCS EEECCCCCCEECCCCCC >Mature Secondary Structure TRLIALPLLALALPAQAELPPCVSDDLMRQASLVVQITDPSVETFANNICRISGTIVQV CHHHHHHHHHHHCCCCCCCCCCCCHHHHCCEEEEEEECCCCHHHHHCCEEEECCEEEEE HRGAANVGQSLTATFDCLIDPSQAVIGGTVYSDPDALARAGAVEVHIGSDGYVAANGAGL ECCCHHCCCCCEEEEEEEECCCCCEECCEEECCCHHHHHCCEEEEEECCCCEEEECCCEE IALNAPTQRIAWEPYCS EEECCCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA