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The map label for this gene is dgdR [H]

Identifier: 89052586

GI number: 89052586

Start: 90081

End: 90956

Strand: Reverse

Name: dgdR [H]

Synonym: Jann_0095

Alternate gene names: 89052586

Gene position: 90956-90081 (Counterclockwise)

Preceding gene: 89052587

Following gene: 89052584

Centisome position: 2.11

GC content: 57.65

Gene sequence:

>876_bases
ATGCTGCCTCCACTCGACAGCGATTTGATGCGCGGCTTCCTGGCCGTCGTAGAAACCGGCTCGCTCACCCGCGCCGGACA
TCGATTGGGACGAACGCAATCGGCGATCTCCATGCAGATCCGCAAACTCGAAGACAGTCTTGGTCAGAGCGTTTTTGTGC
GCGAACCCCGTGGCGTCAGGCTGACGGAACGGGGCAAACAGCTTTTGCCCTATGCTCAACGTGTCGTCGGCTTGTTGGAC
GAAGCAGCAATTGCGTTGCGGGAAAAACCCCTATCCGGACCGGTGCGCGTGGGCGTTCCCGATGAGTACATTCAAGGCGT
ATTGCCTGCGGTTCTCTCCGCCTTTTCACAACGCCACCCCGAAACGCAGGTGACATTGCGCTGTGACTTCAGTGCGCCAC
AGCTAGAAGCCTTGAACTCAGACAAGATTGATCTGGCAGTGATATACGAGGGCTACAGTACTGATGAAGTCGAAGTCCTC
GCAGTCGATCCGACAGTCTGGGTGACATCCATCTCCCACGCTCAACATCTGCACAGGCCGCTGCCGATCTCGATCTATTT
CAGCTCAGATTGGTGCCGCGATTTTGCCCTGCACTCGCTGGAACAGATTGGCATCCCCTACTTTGCCGCCTTTGAATGCG
ACACCTCGGGCGGTATGCGGAGCGCCGTTTCAAATGGCATTGCCGTCGCGCCTCTTGCCCGTAGCTCCATTCCACCCGGA
TGTCGTGAGCTAACCGCGGAAGATGGGTTTATGGGTGTCGACAATGCCCGTGTCGTGTTGCGTCGCAATCCTGCGGGATC
TTCAACTGCGATCGAGGCAATGGTCGCGACTTTGCGCGAAGCATTCTGGCCGCTCACAAAGAACGGCGGGCTCTAG

Upstream 100 bases:

>100_bases
CCGCCTTTCAATTCCGTAGGGCAGGCTTCGACGAATTATTGACATCAATCAAACGCATAGTAATTATGTCACATATATAA
ATTTCTGATGGATACTGATC

Downstream 100 bases:

>100_bases
GTATTGTTCAATAATCAGTGGCGAGACGGTTTTAGATCAGTAATAGCGGTTCAGTGCAGACACTGATCGGCGGTCAAGAG
GCCGCACCGCAGCGTTGCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MLPPLDSDLMRGFLAVVETGSLTRAGHRLGRTQSAISMQIRKLEDSLGQSVFVREPRGVRLTERGKQLLPYAQRVVGLLD
EAAIALREKPLSGPVRVGVPDEYIQGVLPAVLSAFSQRHPETQVTLRCDFSAPQLEALNSDKIDLAVIYEGYSTDEVEVL
AVDPTVWVTSISHAQHLHRPLPISIYFSSDWCRDFALHSLEQIGIPYFAAFECDTSGGMRSAVSNGIAVAPLARSSIPPG
CRELTAEDGFMGVDNARVVLRRNPAGSSTAIEAMVATLREAFWPLTKNGGL

Sequences:

>Translated_291_residues
MLPPLDSDLMRGFLAVVETGSLTRAGHRLGRTQSAISMQIRKLEDSLGQSVFVREPRGVRLTERGKQLLPYAQRVVGLLD
EAAIALREKPLSGPVRVGVPDEYIQGVLPAVLSAFSQRHPETQVTLRCDFSAPQLEALNSDKIDLAVIYEGYSTDEVEVL
AVDPTVWVTSISHAQHLHRPLPISIYFSSDWCRDFALHSLEQIGIPYFAAFECDTSGGMRSAVSNGIAVAPLARSSIPPG
CRELTAEDGFMGVDNARVVLRRNPAGSSTAIEAMVATLREAFWPLTKNGGL
>Mature_291_residues
MLPPLDSDLMRGFLAVVETGSLTRAGHRLGRTQSAISMQIRKLEDSLGQSVFVREPRGVRLTERGKQLLPYAQRVVGLLD
EAAIALREKPLSGPVRVGVPDEYIQGVLPAVLSAFSQRHPETQVTLRCDFSAPQLEALNSDKIDLAVIYEGYSTDEVEVL
AVDPTVWVTSISHAQHLHRPLPISIYFSSDWCRDFALHSLEQIGIPYFAAFECDTSGGMRSAVSNGIAVAPLARSSIPPG
CRELTAEDGFMGVDNARVVLRRNPAGSSTAIEAMVATLREAFWPLTKNGGL

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=264, Percent_Identity=30.3030303030303, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1787806, Length=144, Percent_Identity=30.5555555555556, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788297, Length=144, Percent_Identity=32.6388888888889, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI48994962, Length=155, Percent_Identity=29.0322580645161, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=177, Percent_Identity=29.9435028248588, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI2367136, Length=252, Percent_Identity=25.3968253968254, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787601, Length=146, Percent_Identity=28.7671232876712, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786401, Length=141, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=146, Percent_Identity=33.5616438356164, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789173, Length=149, Percent_Identity=32.8859060402685, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081904, Length=140, Percent_Identity=32.1428571428571, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788887, Length=171, Percent_Identity=30.4093567251462, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787589, Length=183, Percent_Identity=27.8688524590164, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31681; Mature: 31681

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPPLDSDLMRGFLAVVETGSLTRAGHRLGRTQSAISMQIRKLEDSLGQSVFVREPRGVR
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCCCC
LTERGKQLLPYAQRVVGLLDEAAIALREKPLSGPVRVGVPDEYIQGVLPAVLSAFSQRHP
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCC
ETQVTLRCDFSAPQLEALNSDKIDLAVIYEGYSTDEVEVLAVDPTVWVTSISHAQHLHRP
CCEEEEEECCCCCHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCEEEHHHHHHHHHCCC
LPISIYFSSDWCRDFALHSLEQIGIPYFAAFECDTSGGMRSAVSNGIAVAPLARSSIPPG
CCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCEEEEEHHCCCCCCC
CRELTAEDGFMGVDNARVVLRRNPAGSSTAIEAMVATLREAFWPLTKNGGL
HHHHCCCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLPPLDSDLMRGFLAVVETGSLTRAGHRLGRTQSAISMQIRKLEDSLGQSVFVREPRGVR
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCCCC
LTERGKQLLPYAQRVVGLLDEAAIALREKPLSGPVRVGVPDEYIQGVLPAVLSAFSQRHP
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCC
ETQVTLRCDFSAPQLEALNSDKIDLAVIYEGYSTDEVEVLAVDPTVWVTSISHAQHLHRP
CCEEEEEECCCCCHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCEEEHHHHHHHHHCCC
LPISIYFSSDWCRDFALHSLEQIGIPYFAAFECDTSGGMRSAVSNGIAVAPLARSSIPPG
CCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCEEEEEHHCCCCCCC
CRELTAEDGFMGVDNARVVLRRNPAGSSTAIEAMVATLREAFWPLTKNGGL
HHHHCCCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]