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The map label for this gene is ycbY [C]

Identifier: 89052509

GI number: 89052509

Start: 16714

End: 17826

Strand: Reverse

Name: ycbY [C]

Synonym: Jann_0018

Alternate gene names: 89052509

Gene position: 17826-16714 (Counterclockwise)

Preceding gene: 89052510

Following gene: 89052508

Centisome position: 0.41

GC content: 66.22

Gene sequence:

>1113_bases
ATGAACGATCCTGGGATATTTCTAGTGGCGGTGCCGGGGCTGGAGGCTCCGCTGGAGGCCGAGGCGCGCGCGCTGGGCCT
GTCCGGTGTGCAGTCTGTTCCCGGCGGGGTCGCTGCGGATGGCGGGTTGGTCGAGGCGGCGCGGGTGAACCTGTTTGCCC
GGTGTGCTGTGCGGGTCCTGCTGCGCGTGGCGGAGTTCCGGGCGATGCATCTGGCGCAGCTGGACAAGCGATCAAAGAAG
GTGGACTGGCGCGCGGTTTTGCGCACGGACGTGCCCGTGCGGGTGGAGGCCGTGTGCCGCAGGTCAAAGATCTACGTGAA
CAAGGCGGCGGTGCAACGGGTCAGCGGCGGATTGGAGGCGGCGGGTCTTTCCGTGGCGAAAGAGGCTGACCTCACGGTGA
AGGTGCGGATCGATGATGATCTTTGCACGATCTCCGTCGATACGACCGGGGAGGCCCTGCACCGACGCGGCCACAAGGAA
TTTGTCGGAAAGGCCCCGATGCGGGAAACGATGGCCGCAGGGTTTCTGGCACAGATGGGGTTTGACGGACGCCAGACGGT
GGTGGACCCAATGTGCGGGTCGGGCACCTTTGTTCTGGAAGCCGCCGAGATGGCACTGGGGTTGGTCCCGGGGCGGTCGC
GTGGGTTTGCGTTTGAGAACATGGTCGGGGGACGCGACGCGCGGCAGATGTCGGATTCTGGATATTTAGAGAACGGGGAA
TTGGGGGACGATGCGCGCGCGCGACGGCGGTTCTATGGCTTTGACCGGAACGATGGCGCGATCCGGGGCGCCCGCGCGAA
CGCGGAGAGGGCAGGGGTGGCGGATGTCGTGGCGTTTGCACAGGGCGCGATCTCTGACCTTGCACCGCCCGATGGACCGC
CCGGCATCGTCATCGTGAACCCCCCCTATGGCGGGCGGATCGGGGAGCGGAAGCTGCTGTTCGGTTTGTATGGGGCGCTG
GGCGCTGTGCTGGCCGAGCGGTTTGGCGGCTGGTGCGTGGGGATCATCACCAGCGATGGCGGCCTGGCGAAAGCCACGGG
GCTGGCGCTGGAGGCCGGTGGCCCGGTGGATCACTCGGGAACGAAGATTAACCTTTGGAAGGGGCAGCTTTGA

Upstream 100 bases:

>100_bases
CGGCTCGCCGTTTCTTTTTTGAGGCCCTGTATGCGCCCCGGACGTCGGCCTTAAGATGCTTTGCCTTACCCCGGCGCGGA
TTGCCGTGTAGGACGGCGAT

Downstream 100 bases:

>100_bases
GCGGCTATGCGCAGGATCCGGGTCGTCAGATGCCAGTCTAGCGTGGGATATTGAGGCCTCATTGAAGGGTCGTACACCAT
GATCACCTTATCCCTCGCGC

Product: putative RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MNDPGIFLVAVPGLEAPLEAEARALGLSGVQSVPGGVAADGGLVEAARVNLFARCAVRVLLRVAEFRAMHLAQLDKRSKK
VDWRAVLRTDVPVRVEAVCRRSKIYVNKAAVQRVSGGLEAAGLSVAKEADLTVKVRIDDDLCTISVDTTGEALHRRGHKE
FVGKAPMRETMAAGFLAQMGFDGRQTVVDPMCGSGTFVLEAAEMALGLVPGRSRGFAFENMVGGRDARQMSDSGYLENGE
LGDDARARRRFYGFDRNDGAIRGARANAERAGVADVVAFAQGAISDLAPPDGPPGIVIVNPPYGGRIGERKLLFGLYGAL
GAVLAERFGGWCVGIITSDGGLAKATGLALEAGGPVDHSGTKINLWKGQL

Sequences:

>Translated_370_residues
MNDPGIFLVAVPGLEAPLEAEARALGLSGVQSVPGGVAADGGLVEAARVNLFARCAVRVLLRVAEFRAMHLAQLDKRSKK
VDWRAVLRTDVPVRVEAVCRRSKIYVNKAAVQRVSGGLEAAGLSVAKEADLTVKVRIDDDLCTISVDTTGEALHRRGHKE
FVGKAPMRETMAAGFLAQMGFDGRQTVVDPMCGSGTFVLEAAEMALGLVPGRSRGFAFENMVGGRDARQMSDSGYLENGE
LGDDARARRRFYGFDRNDGAIRGARANAERAGVADVVAFAQGAISDLAPPDGPPGIVIVNPPYGGRIGERKLLFGLYGAL
GAVLAERFGGWCVGIITSDGGLAKATGLALEAGGPVDHSGTKINLWKGQL
>Mature_370_residues
MNDPGIFLVAVPGLEAPLEAEARALGLSGVQSVPGGVAADGGLVEAARVNLFARCAVRVLLRVAEFRAMHLAQLDKRSKK
VDWRAVLRTDVPVRVEAVCRRSKIYVNKAAVQRVSGGLEAAGLSVAKEADLTVKVRIDDDLCTISVDTTGEALHRRGHKE
FVGKAPMRETMAAGFLAQMGFDGRQTVVDPMCGSGTFVLEAAEMALGLVPGRSRGFAFENMVGGRDARQMSDSGYLENGE
LGDDARARRRFYGFDRNDGAIRGARANAERAGVADVVAFAQGAISDLAPPDGPPGIVIVNPPYGGRIGERKLLFGLYGAL
GAVLAERFGGWCVGIITSDGGLAKATGLALEAGGPVDHSGTKINLWKGQL

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=349, Percent_Identity=27.2206303724928, Blast_Score=132, Evalue=4e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 38939; Mature: 38939

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDPGIFLVAVPGLEAPLEAEARALGLSGVQSVPGGVAADGGLVEAARVNLFARCAVRVL
CCCCCEEEEECCCCCCCCHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LRVAEFRAMHLAQLDKRSKKVDWRAVLRTDVPVRVEAVCRRSKIYVNKAAVQRVSGGLEA
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHEEEHHHHHHHHHCCCHH
AGLSVAKEADLTVKVRIDDDLCTISVDTTGEALHRRGHKEFVGKAPMRETMAAGFLAQMG
CCCCEEECCCCEEEEEECCCEEEEEECCCHHHHHHCCCHHHHCCCCHHHHHHHHHHHHCC
FDGRQTVVDPMCGSGTFVLEAAEMALGLVPGRSRGFAFENMVGGRDARQMSDSGYLENGE
CCCCHHEECCCCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCCCC
LGDDARARRRFYGFDRNDGAIRGARANAERAGVADVVAFAQGAISDLAPPDGPPGIVIVN
CCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
PPYGGRIGERKLLFGLYGALGAVLAERFGGWCVGIITSDGGLAKATGLALEAGGPVDHSG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEHHCCEEEECCCCCCCCC
TKINLWKGQL
CEEEEECCCC
>Mature Secondary Structure
MNDPGIFLVAVPGLEAPLEAEARALGLSGVQSVPGGVAADGGLVEAARVNLFARCAVRVL
CCCCCEEEEECCCCCCCCHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LRVAEFRAMHLAQLDKRSKKVDWRAVLRTDVPVRVEAVCRRSKIYVNKAAVQRVSGGLEA
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHEEEHHHHHHHHHCCCHH
AGLSVAKEADLTVKVRIDDDLCTISVDTTGEALHRRGHKEFVGKAPMRETMAAGFLAQMG
CCCCEEECCCCEEEEEECCCEEEEEECCCHHHHHHCCCHHHHCCCCHHHHHHHHHHHHCC
FDGRQTVVDPMCGSGTFVLEAAEMALGLVPGRSRGFAFENMVGGRDARQMSDSGYLENGE
CCCCHHEECCCCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCCCC
LGDDARARRRFYGFDRNDGAIRGARANAERAGVADVVAFAQGAISDLAPPDGPPGIVIVN
CCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
PPYGGRIGERKLLFGLYGALGAVLAERFGGWCVGIITSDGGLAKATGLALEAGGPVDHSG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEHHCCEEEECCCCCCCCC
TKINLWKGQL
CEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]