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The map label for this gene is yggB [C]

Identifier: 89052506

GI number: 89052506

Start: 13929

End: 14792

Strand: Reverse

Name: yggB [C]

Synonym: Jann_0015

Alternate gene names: 89052506

Gene position: 14792-13929 (Counterclockwise)

Preceding gene: 89052508

Following gene: 89052504

Centisome position: 0.34

GC content: 58.68

Gene sequence:

>864_bases
GTGGAACCCGTCACCATCCTGTTTCAACAACTGCGCGAAATTGCCCGTGCAGGTATCGAGTTATTGCCGCAAATCGCCGT
GGCCATTGTTGTCCTGCTGCTGACCTGGGCGGTCGCTGCGGGCGTCAAGGCGGTGATCGGGAGAACACTGAAAAGGTCGA
AGCTGCGCCCCAGCCTGAAAGAACTGTTTGTCCTGTTCTCCTCCATCTTCGTTTGGGTGATGGGGCTGATGATCGCCGCC
GTTATCGTGTTTCCGAACCTCACCCCCTCCAGCATCCTTGCGGGTCTGGGCATTGGGTCCGTGGCCATCGGGTTTGCGTT
CAAGGATGTGTTTGAGAATTTTCTCGCCGGGATCCTGATCCTGTCCCGTCGCAAGATGCGGATCGGGGACCACGTGGAAT
GCGAAGGGATTGAGGGCGAAGTGAAGAAAATCGCCATCCGCGAAACGCATATCCTGCAAACAGATGGTCAGTTGGTGATC
GTGCCGAACGCCTTGCTGTTCAAGAATCCCCTCACCATCCGCACCGATCAGGACATCCGCCGCGTGACCGTGATTTGCGG
CGTGGCTTACGGAGAGGATGTGGACGCCGCACGCGACGTGATCCACGAGGCCGTCGCCGGTTGCGATACCGTTCGCCAAT
CCGACAAGCCCATCCAGATTTTCGCGCAGGAGTTCAATTCATCCTCGATCGATTTTGAGGTGACGTGGTGGACCGGGTCA
ACGCCATTGGACGTGCGCCGTTCGCGCGATCAGGTCGTGGCAGGTGTGAAACGCGCACTTGATGATGCCGGGATCGAGAT
CCCGTTCCCGTACCGCACCCTGACGTTCAAGGAGCCGCTGCCCATTGCACAGCCGGAGGGTTAG

Upstream 100 bases:

>100_bases
TGCGCCGGTTTAGGGGGGCTTTTAAGAACGCACAAGTCCGCAGGATTGAACCAAAGTCCCGTCTGCGGCGTTGAAGGAAA
GGACCAGCAAAGGACATATC

Downstream 100 bases:

>100_bases
ACGATTGTCGCGCCTGCCGCGTGCATGGCGGTCAGGGCGTTTGTCAGCGACCCGTCAAAATCAATCGCGCGGCACAGGTC
CGTGCGGATGGTGACGGTGA

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MEPVTILFQQLREIARAGIELLPQIAVAIVVLLLTWAVAAGVKAVIGRTLKRSKLRPSLKELFVLFSSIFVWVMGLMIAA
VIVFPNLTPSSILAGLGIGSVAIGFAFKDVFENFLAGILILSRRKMRIGDHVECEGIEGEVKKIAIRETHILQTDGQLVI
VPNALLFKNPLTIRTDQDIRRVTVICGVAYGEDVDAARDVIHEAVAGCDTVRQSDKPIQIFAQEFNSSSIDFEVTWWTGS
TPLDVRRSRDQVVAGVKRALDDAGIEIPFPYRTLTFKEPLPIAQPEG

Sequences:

>Translated_287_residues
MEPVTILFQQLREIARAGIELLPQIAVAIVVLLLTWAVAAGVKAVIGRTLKRSKLRPSLKELFVLFSSIFVWVMGLMIAA
VIVFPNLTPSSILAGLGIGSVAIGFAFKDVFENFLAGILILSRRKMRIGDHVECEGIEGEVKKIAIRETHILQTDGQLVI
VPNALLFKNPLTIRTDQDIRRVTVICGVAYGEDVDAARDVIHEAVAGCDTVRQSDKPIQIFAQEFNSSSIDFEVTWWTGS
TPLDVRRSRDQVVAGVKRALDDAGIEIPFPYRTLTFKEPLPIAQPEG
>Mature_287_residues
MEPVTILFQQLREIARAGIELLPQIAVAIVVLLLTWAVAAGVKAVIGRTLKRSKLRPSLKELFVLFSSIFVWVMGLMIAA
VIVFPNLTPSSILAGLGIGSVAIGFAFKDVFENFLAGILILSRRKMRIGDHVECEGIEGEVKKIAIRETHILQTDGQLVI
VPNALLFKNPLTIRTDQDIRRVTVICGVAYGEDVDAARDVIHEAVAGCDTVRQSDKPIQIFAQEFNSSSIDFEVTWWTGS
TPLDVRRSRDQVVAGVKRALDDAGIEIPFPYRTLTFKEPLPIAQPEG

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=189, Percent_Identity=29.1005291005291, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786670, Length=165, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787591, Length=209, Percent_Identity=26.7942583732057, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI2367355, Length=184, Percent_Identity=25.5434782608696, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 31571; Mature: 31571

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPVTILFQQLREIARAGIELLPQIAVAIVVLLLTWAVAAGVKAVIGRTLKRSKLRPSLK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ELFVLFSSIFVWVMGLMIAAVIVFPNLTPSSILAGLGIGSVAIGFAFKDVFENFLAGILI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LSRRKMRIGDHVECEGIEGEVKKIAIRETHILQTDGQLVIVPNALLFKNPLTIRTDQDIR
HHCCHHCCCCCEEECCCCCHHHHEEEHHHEEEECCCCEEEECCHHHHCCCCEEECCCHHH
RVTVICGVAYGEDVDAARDVIHEAVAGCDTVRQSDKPIQIFAQEFNSSSIDFEVTWWTGS
HHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEEEECCC
TPLDVRRSRDQVVAGVKRALDDAGIEIPFPYRTLTFKEPLPIAQPEG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MEPVTILFQQLREIARAGIELLPQIAVAIVVLLLTWAVAAGVKAVIGRTLKRSKLRPSLK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ELFVLFSSIFVWVMGLMIAAVIVFPNLTPSSILAGLGIGSVAIGFAFKDVFENFLAGILI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LSRRKMRIGDHVECEGIEGEVKKIAIRETHILQTDGQLVIVPNALLFKNPLTIRTDQDIR
HHCCHHCCCCCEEECCCCCHHHHEEEHHHEEEECCCCEEEECCHHHHCCCCEEECCCHHH
RVTVICGVAYGEDVDAARDVIHEAVAGCDTVRQSDKPIQIFAQEFNSSSIDFEVTWWTGS
HHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEEEECCC
TPLDVRRSRDQVVAGVKRALDDAGIEIPFPYRTLTFKEPLPIAQPEG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]