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The map label for this gene is omp-1E [H]

Identifier: 88658553

GI number: 88658553

Start: 1161672

End: 1162508

Strand: Direct

Name: omp-1E [H]

Synonym: ECH_1140

Alternate gene names: 88658553

Gene position: 1161672-1162508 (Clockwise)

Preceding gene: 88658435

Following gene: 88658131

Centisome position: 98.76

GC content: 34.53

Gene sequence:

>837_bases
ATGAATTGCAAAAAATTTTTTATAACAACTGCATTAGTATCACTAATGTCCTTTCTACCTGGAATATCATTTTCTGATCC
AGTGCAAGGTGACAATATTAGTGGTAATTTCTATGTTAGTGGCAAGTATATGCCAAGTGCTTCGCATTTTGGCATGTTTT
CTGCCAAAGAAGAAAAAAATCCTACTGTTGCATTGTATGGCTTAAAACAAGATTGGGAAGGGATTAGCTCATCAAGTCAC
AATGATAATCATTTCAATAACAAGGGTTATTCATTTAAATATGAAAATAACCCATTTTTAGGGTTTGCAGGAGCTATTGG
TTATTCAATGGGTGGTCCAAGAGTAGAGTTTGAAGTGTCCTATGAAACATTTGACGTTAAAAATCAGGGTAATAACTATA
AAAATGATGCTCACAGATACTGTGCTTTAGGTCAACAAGACAACAGCGGAATACCTAAAACTAGTAAATACGTACTGTTA
AAAAGCGAAGGATTGCTTGACATATCATTTATGCTAAATGCATGCTATGATATAATAAACGAGAGCATACCTTTGTCTCC
TTACATATGTGCAGGTGTTGGTACTGATTTAATATCCATGTTTGAAGCTACAAATCCTAAAATTTCTTACCAAGGGAAGT
TAGGTCTAAGTTACTCTATAAACCCAGAAGCTTCTGTATTTATTGGTGGACATTTTCATAAGGTGATAGGAAACGAATTT
AGGGACATTCCTACTCTGAAAGCATTTGTTACGTCATCAGCTACTCCAGATCTAGCAATAGTAACACTAAGTGTATGTCA
TTTTGGAATAGAACTTGGAGGAAGGTTTAACTTCTAA

Upstream 100 bases:

>100_bases
ATGAGAACCATTGATATCTTATATTAAAAACTAGCTTATAACTTGTCTTTACATTGCAGTTCTACTATTGTTAATTTATT
TTCACTATTTTAGGTGTAAT

Downstream 100 bases:

>100_bases
TTTTGTTATTGCCACATGTTAAAAATAATCTAAACTTGTTTTCATTATTGCTACAGTAAATAAAAATAGTGGCAAAAGAA
TGTAGCAATAAGAAGGGGGG

Product: major outer membrane protein OMP-1E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNCKKFFITTALVSLMSFLPGISFSDPVQGDNISGNFYVSGKYMPSASHFGMFSAKEEKNPTVALYGLKQDWEGISSSSH
NDNHFNNKGYSFKYENNPFLGFAGAIGYSMGGPRVEFEVSYETFDVKNQGNNYKNDAHRYCALGQQDNSGIPKTSKYVLL
KSEGLLDISFMLNACYDIINESIPLSPYICAGVGTDLISMFEATNPKISYQGKLGLSYSINPEASVFIGGHFHKVIGNEF
RDIPTLKAFVTSSATPDLAIVTLSVCHFGIELGGRFNF

Sequences:

>Translated_278_residues
MNCKKFFITTALVSLMSFLPGISFSDPVQGDNISGNFYVSGKYMPSASHFGMFSAKEEKNPTVALYGLKQDWEGISSSSH
NDNHFNNKGYSFKYENNPFLGFAGAIGYSMGGPRVEFEVSYETFDVKNQGNNYKNDAHRYCALGQQDNSGIPKTSKYVLL
KSEGLLDISFMLNACYDIINESIPLSPYICAGVGTDLISMFEATNPKISYQGKLGLSYSINPEASVFIGGHFHKVIGNEF
RDIPTLKAFVTSSATPDLAIVTLSVCHFGIELGGRFNF
>Mature_278_residues
MNCKKFFITTALVSLMSFLPGISFSDPVQGDNISGNFYVSGKYMPSASHFGMFSAKEEKNPTVALYGLKQDWEGISSSSH
NDNHFNNKGYSFKYENNPFLGFAGAIGYSMGGPRVEFEVSYETFDVKNQGNNYKNDAHRYCALGQQDNSGIPKTSKYVLL
KSEGLLDISFMLNACYDIINESIPLSPYICAGVGTDLISMFEATNPKISYQGKLGLSYSINPEASVFIGGHFHKVIGNEF
RDIPTLKAFVTSSATPDLAIVTLSVCHFGIELGGRFNF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 30544; Mature: 30544

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCKKFFITTALVSLMSFLPGISFSDPVQGDNISGNFYVSGKYMPSASHFGMFSAKEEKN
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEECCCCCC
PTVALYGLKQDWEGISSSSHNDNHFNNKGYSFKYENNPFLGFAGAIGYSMGGPRVEFEVS
CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEHHHHCCCCCCCEEEEEEE
YETFDVKNQGNNYKNDAHRYCALGQQDNSGIPKTSKYVLLKSEGLLDISFMLNACYDIIN
EEEEEECCCCCCCCCCHHHHEECCCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHC
ESIPLSPYICAGVGTDLISMFEATNPKISYQGKLGLSYSINPEASVFIGGHFHKVIGNEF
CCCCCCCEEECCCCHHHHHHHHCCCCCEEEECCCCEEEECCCCCEEEECCCHHHHHCCHH
RDIPTLKAFVTSSATPDLAIVTLSVCHFGIELGGRFNF
HCCCHHHHHHHCCCCCCEEEEEEEHHHHHHCCCCCCCC
>Mature Secondary Structure
MNCKKFFITTALVSLMSFLPGISFSDPVQGDNISGNFYVSGKYMPSASHFGMFSAKEEKN
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEECCCCCC
PTVALYGLKQDWEGISSSSHNDNHFNNKGYSFKYENNPFLGFAGAIGYSMGGPRVEFEVS
CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEHHHHCCCCCCCEEEEEEE
YETFDVKNQGNNYKNDAHRYCALGQQDNSGIPKTSKYVLLKSEGLLDISFMLNACYDIIN
EEEEEECCCCCCCCCCHHHHEECCCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHC
ESIPLSPYICAGVGTDLISMFEATNPKISYQGKLGLSYSINPEASVFIGGHFHKVIGNEF
CCCCCCCEEECCCCHHHHHHHHCCCCCEEEECCCCEEEECCCCCEEEECCCHHHHHCCHH
RDIPTLKAFVTSSATPDLAIVTLSVCHFGIELGGRFNF
HCCCHHHHHHHCCCCCCEEEEEEEHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]