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The map label for this gene is atpH

Identifier: 88658063

GI number: 88658063

Start: 120226

End: 120783

Strand: Direct

Name: atpH

Synonym: ECH_0131

Alternate gene names: 88658063

Gene position: 120226-120783 (Clockwise)

Preceding gene: 88658415

Following gene: 88657691

Centisome position: 10.22

GC content: 28.85

Gene sequence:

>558_bases
ATGATTCAATATAGAGGTGGCTATATAGCATCTTGTTATGCTCAAGCATTATTTAGTGTGTCAAGTAATGTGAACTCTAT
TTGTAAAAATGCAGAGTTTGTCGTTAGTGTTCTTGAGAATTGTAATGATATTTCTTTATTTTTATCTAATCCTAGGGTGT
CAAGGGAAGATAAAGTAAAGCTTGTTGAAGTAATAGGGGATTATATTGATTCTATATTAGTCAAGTTTATTATGGTTGTT
ATTGAAAATAATAGAGGAAATATATTGCTGCAGATTTTGAATACCTTTCTTGATTTAGTAAAAAAACATAATAGGGAAGT
TAGTATCTCTGTTACTTCATGTGCTGTATTAACAAAGCAAGAAGAAGAAGGTATATGTGATGCATTATTTGAGAAATATG
GAAAAGTTGTCAGTATAACAAACAATATAGATCCTAGTATTTTAGGTGGTTTTATTATTAGGGTGAATTTTGACGTAATA
GATGTATCTTTAAATAGTTATTTACAAAGTTTGCGAGAACTTAGTAAAATGGCTATACGTAGTAGTATAAGTGAATAG

Upstream 100 bases:

>100_bases
AAAGTAGCACTATTATATTGTTTATTAAGATATAAAATACTTGACTGGTGTTGTTATAATGGTATAACATTTTGCTGTTT
TATGTTTCCTTTAAAAGCAT

Downstream 100 bases:

>100_bases
TAGGGTACGGTAATGAATAATACTATATCTCCAGGTGAGGTGTTAAAAGTTATTAAGGAGCGTATTGAGAATTTTGATAA
CCAAGTAAAGTCTGATAGTG

Product: ATP synthase F1, delta subunit

Products: ATP; H+; H2O [C]

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MIQYRGGYIASCYAQALFSVSSNVNSICKNAEFVVSVLENCNDISLFLSNPRVSREDKVKLVEVIGDYIDSILVKFIMVV
IENNRGNILLQILNTFLDLVKKHNREVSISVTSCAVLTKQEEEGICDALFEKYGKVVSITNNIDPSILGGFIIRVNFDVI
DVSLNSYLQSLRELSKMAIRSSISE

Sequences:

>Translated_185_residues
MIQYRGGYIASCYAQALFSVSSNVNSICKNAEFVVSVLENCNDISLFLSNPRVSREDKVKLVEVIGDYIDSILVKFIMVV
IENNRGNILLQILNTFLDLVKKHNREVSISVTSCAVLTKQEEEGICDALFEKYGKVVSITNNIDPSILGGFIIRVNFDVI
DVSLNSYLQSLRELSKMAIRSSISE
>Mature_185_residues
MIQYRGGYIASCYAQALFSVSSNVNSICKNAEFVVSVLENCNDISLFLSNPRVSREDKVKLVEVIGDYIDSILVKFIMVV
IENNRGNILLQILNTFLDLVKKHNREVSISVTSCAVLTKQEEEGICDALFEKYGKVVSITNNIDPSILGGFIIRVNFDVI
DVSLNSYLQSLRELSKMAIRSSISE

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Caenorhabditis elegans, GI71984710, Length=187, Percent_Identity=26.7379679144385, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71984717, Length=187, Percent_Identity=26.7379679144385, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_EHRCR (Q2GHX4)

Other databases:

- EMBL:   CP000236
- RefSeq:   YP_506959.1
- ProteinModelPortal:   Q2GHX4
- SMR:   Q2GHX4
- STRING:   Q2GHX4
- GeneID:   3927250
- GenomeReviews:   CP000236_GR
- KEGG:   ech:ECH_0131
- TIGR:   ECH_0131
- eggNOG:   COG0712
- HOGENOM:   HBG750978
- OMA:   DASLKSY
- PhylomeDB:   Q2GHX4
- ProtClustDB:   CLSK749305
- BioCyc:   ECHA205920:ECH_0131-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14 [C]

Molecular weight: Translated: 20653; Mature: 20653

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQYRGGYIASCYAQALFSVSSNVNSICKNAEFVVSVLENCNDISLFLSNPRVSREDKVK
CCEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
LVEVIGDYIDSILVKFIMVVIENNRGNILLQILNTFLDLVKKHNREVSISVTSCAVLTKQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHEEECC
EEEGICDALFEKYGKVVSITNNIDPSILGGFIIRVNFDVIDVSLNSYLQSLRELSKMAIR
CCCCHHHHHHHHCCCEEEEECCCCHHHHCCEEEEEEEEEEEEEHHHHHHHHHHHHHHHHH
SSISE
HHCCC
>Mature Secondary Structure
MIQYRGGYIASCYAQALFSVSSNVNSICKNAEFVVSVLENCNDISLFLSNPRVSREDKVK
CCEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
LVEVIGDYIDSILVKFIMVVIENNRGNILLQILNTFLDLVKKHNREVSISVTSCAVLTKQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHEEECC
EEEGICDALFEKYGKVVSITNNIDPSILGGFIIRVNFDVIDVSLNSYLQSLRELSKMAIR
CCCCHHHHHHHHCCCEEEEECCCCHHHHCCEEEEEEEEEEEEEHHHHHHHHHHHHHHHHH
SSISE
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ADP; H+; Phosphate [C]

Specific reaction: ADP + (4) H+ + Phosphate <==> ATP + (3) H+ + H2O [C]

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA