Click here to switch to the map view.

The map label for this gene is rplJ

Identifier: 88608880

GI number: 88608880

Start: 602843

End: 603367

Strand: Reverse

Name: rplJ

Synonym: NSE_0680

Alternate gene names: NA

Gene position: 603367-602843 (Counterclockwise)

Preceding gene: 88608488

Following gene: 88608716

Centisome position: 70.24

GC content: 41.9

Gene sequence:

>525_bases
ATGAACGAGAGAAAAGCGGCTTTTTTGGCGAAGCTTGAGATGATACTTGAGCAGAAGGTTGTACTTGTCGTGAAAGTTTC
CTCGCTTAGTGCTCAGGAAGTGTTTAGTGTCCGTGAAAGGTTGTGGGATTTTGGGGGTAACTTCAATTTTGTAAAGAATT
CGCTCGCTAGAATTGCTGTTGAAAATTCGAGTTTGTCCTTTCTGTCTGAGTACTTTTCTAAGAGTGTTGCTTTTGTCCAC
TGTAGTCAGAATGTTCCGGAGTTCCTACGTTGTATCCTTAAGTTTTCCGGTGAGTATGGGAAAGATAGATTGGAAATTCT
TGGTGGCAAGTATGATAAGGTCGTCTTTGGGCGTCGGTTGATGGATGAGTTTTCTAAACTGCCTAACGAAACGCACGTGT
ACTTGTCGCTCATCAATGCTATAAATGCTGTTCCTATTGCACTAGTGAACTCTCTTGATGGTCCCGCAAGGCTTTTGGCA
GGTTATTTTGATTCCTATGTGAAAAGTGCTAATGTTAATTGCTGA

Upstream 100 bases:

>100_bases
AGAATGTTAGCTTGCAGAGTTATGTGCGTAGCATTAGTGTGAGTAGTACCATGGGAGATGGGTGCTTTGTAGATTTTCTA
GCATTATAGTGGGATTTGTT

Downstream 100 bases:

>100_bases
TTAAAAAGTTGTTGTCCTTACCTGTTTTTTTGGAGGTTTTTGTGTCTAAAGTTGAGTGTTCTGAAATTGCTCAAAAGATT
TTATCTTTGAGCCTTGTTGA

Product: 50S ribosomal protein L10

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MNERKAAFLAKLEMILEQKVVLVVKVSSLSAQEVFSVRERLWDFGGNFNFVKNSLARIAVENSSLSFLSEYFSKSVAFVH
CSQNVPEFLRCILKFSGEYGKDRLEILGGKYDKVVFGRRLMDEFSKLPNETHVYLSLINAINAVPIALVNSLDGPARLLA
GYFDSYVKSANVNC

Sequences:

>Translated_174_residues
MNERKAAFLAKLEMILEQKVVLVVKVSSLSAQEVFSVRERLWDFGGNFNFVKNSLARIAVENSSLSFLSEYFSKSVAFVH
CSQNVPEFLRCILKFSGEYGKDRLEILGGKYDKVVFGRRLMDEFSKLPNETHVYLSLINAINAVPIALVNSLDGPARLLA
GYFDSYVKSANVNC
>Mature_174_residues
MNERKAAFLAKLEMILEQKVVLVVKVSSLSAQEVFSVRERLWDFGGNFNFVKNSLARIAVENSSLSFLSEYFSKSVAFVH
CSQNVPEFLRCILKFSGEYGKDRLEILGGKYDKVVFGRRLMDEFSKLPNETHVYLSLINAINAVPIALVNSLDGPARLLA
GYFDSYVKSANVNC

Specific function: Unknown

COG id: COG0244

COG function: function code J; Ribosomal protein L10

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19558; Mature: 19558

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNERKAAFLAKLEMILEQKVVLVVKVSSLSAQEVFSVRERLWDFGGNFNFVKNSLARIAV
CCCHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
ENSSLSFLSEYFSKSVAFVHCSQNVPEFLRCILKFSGEYGKDRLEILGGKYDKVVFGRRL
CCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHH
MDEFSKLPNETHVYLSLINAINAVPIALVNSLDGPARLLAGYFDSYVKSANVNC
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNERKAAFLAKLEMILEQKVVLVVKVSSLSAQEVFSVRERLWDFGGNFNFVKNSLARIAV
CCCHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
ENSSLSFLSEYFSKSVAFVHCSQNVPEFLRCILKFSGEYGKDRLEILGGKYDKVVFGRRL
CCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHH
MDEFSKLPNETHVYLSLINAINAVPIALVNSLDGPARLLAGYFDSYVKSANVNC
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA