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The map label for this gene is ssb

Identifier: 88608751

GI number: 88608751

Start: 676858

End: 677313

Strand: Direct

Name: ssb

Synonym: NSE_0759

Alternate gene names: 88608751

Gene position: 676858-677313 (Clockwise)

Preceding gene: 88608834

Following gene: 88608729

Centisome position: 78.8

GC content: 41.23

Gene sequence:

>456_bases
ATGATTAATAAAGTTATTTTGGTCGGCAACCTTGGTAAAGATCCAGAGGTACGTACCATGTCGAATGCAAAGCAGGTGGC
CACTTTTTCATTAGCAACAACGGAAAATTGGAACGACAAAAATACGGGAGAGCGTGTTTCAAAAACTGAGTGGCATCAAG
TGGTTGTATTCAACGAGCCTTTAATCAAGGTGATAAGTAACTACGTAAATAAAGGCACTCGGTTGTATATCGAAGGTTCA
CTCCAAACAAGAAAATGGACTGATAACAATGGCATTGAGAGATACACAACCGAAGTGGTGCTAAACCCATTCAATTCAGT
TTTAAAGATACTCAGCCCGCAGGGGAGCAGTGAAACCCATTATTCCGGAGCTCCGTCCAACAACACAAGAGCTGATTTAG
GAACACCAACGAATCATGTTAATGACACCTTAGATGACGACGATATACCTTTTTGA

Upstream 100 bases:

>100_bases
ATATGCTTTGGCTCTTTCAGGTAACATTGATCGAAATTCTAGTCCATGTAACTATTTTGTGATATCCTTTCAGGCCGTTC
GGACGTGTGAAAGATACAAT

Downstream 100 bases:

>100_bases
TTGAGAGCCATTTTCATGAGGTGCTCCCTTTTTCGGCTTAAGATTCGGTTGCTAGAACTTTGCGCACGGGCTCATGTGTT
GCCCATCCGAAGTGTGAAAC

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MINKVILVGNLGKDPEVRTMSNAKQVATFSLATTENWNDKNTGERVSKTEWHQVVVFNEPLIKVISNYVNKGTRLYIEGS
LQTRKWTDNNGIERYTTEVVLNPFNSVLKILSPQGSSETHYSGAPSNNTRADLGTPTNHVNDTLDDDDIPF

Sequences:

>Translated_151_residues
MINKVILVGNLGKDPEVRTMSNAKQVATFSLATTENWNDKNTGERVSKTEWHQVVVFNEPLIKVISNYVNKGTRLYIEGS
LQTRKWTDNNGIERYTTEVVLNPFNSVLKILSPQGSSETHYSGAPSNNTRADLGTPTNHVNDTLDDDDIPF
>Mature_151_residues
MINKVILVGNLGKDPEVRTMSNAKQVATFSLATTENWNDKNTGERVSKTEWHQVVVFNEPLIKVISNYVNKGTRLYIEGS
LQTRKWTDNNGIERYTTEVVLNPFNSVLKILSPQGSSETHYSGAPSNNTRADLGTPTNHVNDTLDDDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=104, Percent_Identity=35.5769230769231, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1790494, Length=125, Percent_Identity=53.6, Blast_Score=134, Evalue=2e-33,
Organism=Drosophila melanogaster, GI85725234, Length=99, Percent_Identity=34.3434343434343, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24647376, Length=99, Percent_Identity=34.3434343434343, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 16895; Mature: 16895

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKVILVGNLGKDPEVRTMSNAKQVATFSLATTENWNDKNTGERVSKTEWHQVVVFNEP
CCCCEEEEECCCCCCCCEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCC
LIKVISNYVNKGTRLYIEGSLQTRKWTDNNGIERYTTEVVLNPFNSVLKILSPQGSSETH
HHHHHHHHHCCCEEEEEECCCCEEEECCCCCCEEEEHHEEECCHHHHHHHHCCCCCCCCC
YSGAPSNNTRADLGTPTNHVNDTLDDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MINKVILVGNLGKDPEVRTMSNAKQVATFSLATTENWNDKNTGERVSKTEWHQVVVFNEP
CCCCEEEEECCCCCCCCEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCC
LIKVISNYVNKGTRLYIEGSLQTRKWTDNNGIERYTTEVVLNPFNSVLKILSPQGSSETH
HHHHHHHHHCCCEEEEEECCCCEEEECCCCCCEEEEHHEEECCHHHHHHHHCCCCCCCCC
YSGAPSNNTRADLGTPTNHVNDTLDDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA