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The map label for this gene is omp85 [H]

Identifier: 88608737

GI number: 88608737

Start: 638165

End: 640399

Strand: Reverse

Name: omp85 [H]

Synonym: NSE_0718

Alternate gene names: 88608737

Gene position: 640399-638165 (Counterclockwise)

Preceding gene: 88607986

Following gene: 88608741

Centisome position: 74.55

GC content: 41.3

Gene sequence:

>2235_bases
ATGCGAAAAAAACTTTTTTTGGTTTGGCTTCTTTTTTTGTCAAGGTTTTGCTTTGCGGATGAGGTAGTCGAAATTAGAAT
TTCTGGTAATAAAAGAGTCGCCGAGACAACGATCCATGGATTGCTGCATGTTGAGGTAGGGCAGGATGTCACTTCTGATG
AGTTGAATGCAGTTTTTAAGAGGCTTACAGCGTCACGTTTGTTCAGCAGTGTGGAGCTTGATCTAACAGCTGGCATTCTA
GAGGTAAAACTCCAGGAGAACCCCATACTCCGCAATGTTGTGGTTAAAGGGAATAAGCTTCTTAGTAGAGCAGCGATCGA
TAAAATTCTTGTCTACAAAAAAGATGCGATCTTTGATGTTCACGAATTTGAGAATAGTATAACTGCTCTGAAGACCTACT
ATAGGGATTCTGTTGTAGAGAAAACAGCTATTAGTTACAGAGTTGTCCCAATAGATGAAAATAATGTCAATGTAGAAGTG
ACGGTGAAGGAGGCTAAGCCTACTGTCATTCGAGCAATAGAGTTTGAGGGTAATATCAGGTATTCCGATAGGGTCCTCAA
GCATGTTATTAGGAGCAGGGAAAAGAGTATACTCAGACTTTTTGGCACAGCACATTACTACTCTAGGGAGAAATTGGAAT
TTGATAAGGATCTGTTAGCTGATTTTTATCAAGGGAAGGGGTATTTTGACTATTCACTAGAAGGTCTCGAAGAGAGAGAA
AATGAGGATGGTGTTGTTCTAGTTTTCAAGCTAAAAGAAGGGGCTAGGTACAGCTTTGGCAGGGTAAATGTTGTTTCAGA
GAAGAGCGAGATAGAGATAAGTGATCTAAAAGAAAAGGTCAGGATAAGGGAGGGTGCCGTTTTCAATATAGGTGCTGTGA
GGGAAAATGCCTTAACACTGCTAAGTGTACTTAATGAAAGGGGACATATGTTTGTTAATGTTGTTCCTCAGTATCAGCCT
GATGCAGATGGTAGGGTGGATGTTACGTATTATGTTGTTAGCACGAAAAAATATAGGATTCGGAAGATTAACATAAGTGG
TAACATAAGGACCAGGGATACAGTCATCAGGCGCGAAATGCTCTTGAGCGAGAATGATTTGTACCAACCTAGTAAAGTTG
CGGATTCACGCAGACGGATACTTAATTTAGGTTTTTTCGACGAGGTTTATATAGAGGAGCGTAAAGTTGATGACCAAAAT
CTCATACTCGAGGTAAGAGTAAAAGAGCGTCCTACTGGGACGCTAAATCTGAGCGGTGGTTATGGATCAGATGTTGGCTT
TTTTGGAAACTTTTCCTTTGTTGAAAATAACCTCTTTGGTACATCTGATCGTTTAGTTGTTGAGTTGCAAAGAGCTTCCT
TGGGAAGTAATTACTCTGTCGAATTTCAGCGAAAACGGATCTTCGACACATTTATCACAGCGGGTGCGTCTGTTTTTTAT
AAGAACCGTAATGAGAAGGCGAATGGATTGTACAAATTCTCATCTGTCGGTGGTGATGGTTCAGTGAGTTACTCTCTTAG
AGATGATTTACGTTTACATCTTGGTTATTCATTGAGCTTCGATAGGATTTTTGATGTTGATGGTGACGCGCCTGAATCTG
TCAAGAGGAGTGCTGGAACCAAAATTCTCTCTGCGGTTAGTTATTCGCTCTTCCTGAATAAACTAGATAATTATTTTGTT
CCTAGATACGGCTACGGAGTCAGATTCGGTAACAAATTTGCTGGAATTGGCGGAGATGTTAAGTTCTTACGATCTGATTT
TAAAGCTGGTGGCTTTGTTTCTATTTTTGATCAAAGCGCTGTGTTGAGCCTCGTTGTGCGTGCAGGCAATATATTTGGAT
ATTCTGGACAGGGCGTTGATGTTGCCAATAGGTTTTTCCTCAACGAAATGCGTGGGTTTGATAGTCTTGGCATTGGTCCA
CGTGATGTCGACACGGGCGATGCATTAGGTGGAAACTCTTTCATTCTTGGTACTGCGGAAGTGCAGGTACCGATGAGGCT
GCCTGTAGAGCTCGATTTGAAAGCTGCTTTTTTCTATGAGGTTGGTACTTTAGCGGGTGTGGATGTTACTGCGGAAAAAG
TTTATGACTCACATGCACTAAGGAGTAGTATTGGCGCGGGTTTAGTATGGAATAGTCCGTTTGGTGTGCTTAGAGTCGAT
GTAGCGAAGGCTTTAATAGAAGGAAAAGGAGATAAGGTGAAGACCGTAAAGTTCGGTATAGTGTCACCATTTTAA

Upstream 100 bases:

>100_bases
TGGCTTTCAGCAATGGGCAGGAAGAGCAGGGATGTTGTTATTGATAGCTATCCTTGTTTTTGCTGTTTTTAACGATATTC
GTTTTGTTCTCAGGTAGTTG

Downstream 100 bases:

>100_bases
CGAATGTCAACGATATACGCGCTTTCTACTGTTTTTGGGAAGTCAGGCGTAGCTGTTTTTAGAATTTCTGGGCCAGACGC
ACTGCGGGCTCTAGAACTCC

Product: OMP85 family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 744; Mature: 744

Protein sequence:

>744_residues
MRKKLFLVWLLFLSRFCFADEVVEIRISGNKRVAETTIHGLLHVEVGQDVTSDELNAVFKRLTASRLFSSVELDLTAGIL
EVKLQENPILRNVVVKGNKLLSRAAIDKILVYKKDAIFDVHEFENSITALKTYYRDSVVEKTAISYRVVPIDENNVNVEV
TVKEAKPTVIRAIEFEGNIRYSDRVLKHVIRSREKSILRLFGTAHYYSREKLEFDKDLLADFYQGKGYFDYSLEGLEERE
NEDGVVLVFKLKEGARYSFGRVNVVSEKSEIEISDLKEKVRIREGAVFNIGAVRENALTLLSVLNERGHMFVNVVPQYQP
DADGRVDVTYYVVSTKKYRIRKINISGNIRTRDTVIRREMLLSENDLYQPSKVADSRRRILNLGFFDEVYIEERKVDDQN
LILEVRVKERPTGTLNLSGGYGSDVGFFGNFSFVENNLFGTSDRLVVELQRASLGSNYSVEFQRKRIFDTFITAGASVFY
KNRNEKANGLYKFSSVGGDGSVSYSLRDDLRLHLGYSLSFDRIFDVDGDAPESVKRSAGTKILSAVSYSLFLNKLDNYFV
PRYGYGVRFGNKFAGIGGDVKFLRSDFKAGGFVSIFDQSAVLSLVVRAGNIFGYSGQGVDVANRFFLNEMRGFDSLGIGP
RDVDTGDALGGNSFILGTAEVQVPMRLPVELDLKAAFFYEVGTLAGVDVTAEKVYDSHALRSSIGAGLVWNSPFGVLRVD
VAKALIEGKGDKVKTVKFGIVSPF

Sequences:

>Translated_744_residues
MRKKLFLVWLLFLSRFCFADEVVEIRISGNKRVAETTIHGLLHVEVGQDVTSDELNAVFKRLTASRLFSSVELDLTAGIL
EVKLQENPILRNVVVKGNKLLSRAAIDKILVYKKDAIFDVHEFENSITALKTYYRDSVVEKTAISYRVVPIDENNVNVEV
TVKEAKPTVIRAIEFEGNIRYSDRVLKHVIRSREKSILRLFGTAHYYSREKLEFDKDLLADFYQGKGYFDYSLEGLEERE
NEDGVVLVFKLKEGARYSFGRVNVVSEKSEIEISDLKEKVRIREGAVFNIGAVRENALTLLSVLNERGHMFVNVVPQYQP
DADGRVDVTYYVVSTKKYRIRKINISGNIRTRDTVIRREMLLSENDLYQPSKVADSRRRILNLGFFDEVYIEERKVDDQN
LILEVRVKERPTGTLNLSGGYGSDVGFFGNFSFVENNLFGTSDRLVVELQRASLGSNYSVEFQRKRIFDTFITAGASVFY
KNRNEKANGLYKFSSVGGDGSVSYSLRDDLRLHLGYSLSFDRIFDVDGDAPESVKRSAGTKILSAVSYSLFLNKLDNYFV
PRYGYGVRFGNKFAGIGGDVKFLRSDFKAGGFVSIFDQSAVLSLVVRAGNIFGYSGQGVDVANRFFLNEMRGFDSLGIGP
RDVDTGDALGGNSFILGTAEVQVPMRLPVELDLKAAFFYEVGTLAGVDVTAEKVYDSHALRSSIGAGLVWNSPFGVLRVD
VAKALIEGKGDKVKTVKFGIVSPF
>Mature_744_residues
MRKKLFLVWLLFLSRFCFADEVVEIRISGNKRVAETTIHGLLHVEVGQDVTSDELNAVFKRLTASRLFSSVELDLTAGIL
EVKLQENPILRNVVVKGNKLLSRAAIDKILVYKKDAIFDVHEFENSITALKTYYRDSVVEKTAISYRVVPIDENNVNVEV
TVKEAKPTVIRAIEFEGNIRYSDRVLKHVIRSREKSILRLFGTAHYYSREKLEFDKDLLADFYQGKGYFDYSLEGLEERE
NEDGVVLVFKLKEGARYSFGRVNVVSEKSEIEISDLKEKVRIREGAVFNIGAVRENALTLLSVLNERGHMFVNVVPQYQP
DADGRVDVTYYVVSTKKYRIRKINISGNIRTRDTVIRREMLLSENDLYQPSKVADSRRRILNLGFFDEVYIEERKVDDQN
LILEVRVKERPTGTLNLSGGYGSDVGFFGNFSFVENNLFGTSDRLVVELQRASLGSNYSVEFQRKRIFDTFITAGASVFY
KNRNEKANGLYKFSSVGGDGSVSYSLRDDLRLHLGYSLSFDRIFDVDGDAPESVKRSAGTKILSAVSYSLFLNKLDNYFV
PRYGYGVRFGNKFAGIGGDVKFLRSDFKAGGFVSIFDQSAVLSLVVRAGNIFGYSGQGVDVANRFFLNEMRGFDSLGIGP
RDVDTGDALGGNSFILGTAEVQVPMRLPVELDLKAAFFYEVGTLAGVDVTAEKVYDSHALRSSIGAGLVWNSPFGVLRVD
VAKALIEGKGDKVKTVKFGIVSPF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=816, Percent_Identity=22.5490196078431, Blast_Score=151, Evalue=1e-37,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 83556; Mature: 83556

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKLFLVWLLFLSRFCFADEVVEIRISGNKRVAETTIHGLLHVEVGQDVTSDELNAVFK
CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEHEEEEEEEEEEECCCCCHHHHHHHHH
RLTASRLFSSVELDLTAGILEVKLQENPILRNVVVKGNKLLSRAAIDKILVYKKDAIFDV
HHHHHHHHHHEEEEEEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHEEEECCCEEEH
HEFENSITALKTYYRDSVVEKTAISYRVVPIDENNVNVEVTVKEAKPTVIRAIEFEGNIR
HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCEEEEEEEECCCCEEEEEEEECCCCC
YSDRVLKHVIRSREKSILRLFGTAHYYSREKLEFDKDLLADFYQGKGYFDYSLEGLEERE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHCCCCEEEEECCCHHHCC
NEDGVVLVFKLKEGARYSFGRVNVVSEKSEIEISDLKEKVRIREGAVFNIGAVRENALTL
CCCCEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHH
LSVLNERGHMFVNVVPQYQPDADGRVDVTYYVVSTKKYRIRKINISGNIRTRDTVIRREM
HHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHH
LLSENDLYQPSKVADSRRRILNLGFFDEVYIEERKVDDQNLILEVRVKERPTGTLNLSGG
HHCCCCCCCCHHHHHHHHHEEECCCCHHHHHHHCCCCCCCEEEEEEEECCCCEEEEECCC
YGSDVGFFGNFSFVENNLFGTSDRLVVELQRASLGSNYSVEFQRKRIFDTFITAGASVFY
CCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHCCCEEEE
KNRNEKANGLYKFSSVGGDGSVSYSLRDDLRLHLGYSLSFDRIFDVDGDAPESVKRSAGT
ECCCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECEECCCEEEECCCCCHHHHHHHHHH
KILSAVSYSLFLNKLDNYFVPRYGYGVRFGNKFAGIGGDVKFLRSDFKAGGFVSIFDQSA
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEECCCCCCHHHHHHHCCCCCEEEEECHHH
VLSLVVRAGNIFGYSGQGVDVANRFFLNEMRGFDSLGIGPRDVDTGDALGGNSFILGTAE
HHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
VQVPMRLPVELDLKAAFFYEVGTLAGVDVTAEKVYDSHALRSSIGAGLVWNSPFGVLRVD
EEEEEECCEEECCEEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCEEECCCCCEEEHH
VAKALIEGKGDKVKTVKFGIVSPF
HHHHHHCCCCCEEEEEEEEECCCC
>Mature Secondary Structure
MRKKLFLVWLLFLSRFCFADEVVEIRISGNKRVAETTIHGLLHVEVGQDVTSDELNAVFK
CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEHEEEEEEEEEEECCCCCHHHHHHHHH
RLTASRLFSSVELDLTAGILEVKLQENPILRNVVVKGNKLLSRAAIDKILVYKKDAIFDV
HHHHHHHHHHEEEEEEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHEEEECCCEEEH
HEFENSITALKTYYRDSVVEKTAISYRVVPIDENNVNVEVTVKEAKPTVIRAIEFEGNIR
HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCEEEEEEEECCCCEEEEEEEECCCCC
YSDRVLKHVIRSREKSILRLFGTAHYYSREKLEFDKDLLADFYQGKGYFDYSLEGLEERE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHCCCCEEEEECCCHHHCC
NEDGVVLVFKLKEGARYSFGRVNVVSEKSEIEISDLKEKVRIREGAVFNIGAVRENALTL
CCCCEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHH
LSVLNERGHMFVNVVPQYQPDADGRVDVTYYVVSTKKYRIRKINISGNIRTRDTVIRREM
HHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHH
LLSENDLYQPSKVADSRRRILNLGFFDEVYIEERKVDDQNLILEVRVKERPTGTLNLSGG
HHCCCCCCCCHHHHHHHHHEEECCCCHHHHHHHCCCCCCCEEEEEEEECCCCEEEEECCC
YGSDVGFFGNFSFVENNLFGTSDRLVVELQRASLGSNYSVEFQRKRIFDTFITAGASVFY
CCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHCCCEEEE
KNRNEKANGLYKFSSVGGDGSVSYSLRDDLRLHLGYSLSFDRIFDVDGDAPESVKRSAGT
ECCCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECEECCCEEEECCCCCHHHHHHHHHH
KILSAVSYSLFLNKLDNYFVPRYGYGVRFGNKFAGIGGDVKFLRSDFKAGGFVSIFDQSA
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEECCCCCCHHHHHHHCCCCCEEEEECHHH
VLSLVVRAGNIFGYSGQGVDVANRFFLNEMRGFDSLGIGPRDVDTGDALGGNSFILGTAE
HHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
VQVPMRLPVELDLKAAFFYEVGTLAGVDVTAEKVYDSHALRSSIGAGLVWNSPFGVLRVD
EEEEEECCEEECCEEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCEEECCCCCEEEHH
VAKALIEGKGDKVKTVKFGIVSPF
HHHHHHCCCCCEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]