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The map label for this gene is rplW

Identifier: 88608673

GI number: 88608673

Start: 225726

End: 226010

Strand: Direct

Name: rplW

Synonym: NSE_0268

Alternate gene names: 88608673

Gene position: 225726-226010 (Clockwise)

Preceding gene: 88608608

Following gene: 88608825

Centisome position: 26.28

GC content: 40.7

Gene sequence:

>285_bases
ATGAAGCTCGATTTAATAGGCCCTTTGGTGGTCACTGAGAAGTCATATTTGCTAAAGGATTCCTTAGGGAAGATTTCGGT
TTTTGCGCCTGTTTCAGCAACCAAGCGGCAAGTTAGGTCTCTTTTTTCGGAAAGGTTCAAAAGCATAAAGATTCTAGCAG
TTAATTCTGTCCTTACTTGTGGGAAAAGTAAGCGTTTTAAGGGTAAGTCAGGTAAACGCTCTGATAGGAAGAAGTTTATC
CTCACTGTAGATGGTGGTTCCCAACTTGATTTGAGTAGGTTATAG

Upstream 100 bases:

>100_bases
TTTTATGGGGATCTTCTGCTAATGTATACGATGTTGTCCTGCATGACTTTGTGTTGCTTGAGAAAGCATCTGTTGATGTA
TTGGTTAAGAGGTTGCTGAA

Downstream 100 bases:

>100_bases
ATTTTATGCCGGTTAAGAATTTAAAGCCTTTTAATGCTTCCTCCAGAGGTGCAGTTCTAGTTGATTATTCTGAGCTCTGG
CGTGGGTCGCCTGAGAAAAA

Product: 50S ribosomal protein L23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MKLDLIGPLVVTEKSYLLKDSLGKISVFAPVSATKRQVRSLFSERFKSIKILAVNSVLTCGKSKRFKGKSGKRSDRKKFI
LTVDGGSQLDLSRL

Sequences:

>Translated_94_residues
MKLDLIGPLVVTEKSYLLKDSLGKISVFAPVSATKRQVRSLFSERFKSIKILAVNSVLTCGKSKRFKGKSGKRSDRKKFI
LTVDGGSQLDLSRL
>Mature_94_residues
MKLDLIGPLVVTEKSYLLKDSLGKISVFAPVSATKRQVRSLFSERFKSIKILAVNSVLTCGKSKRFKGKSGKRSDRKKFI
LTVDGGSQLDLSRL

Specific function: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome [H]

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR012678
- InterPro:   IPR001014
- InterPro:   IPR013025 [H]

Pfam domain/function: PF00276 Ribosomal_L23 [H]

EC number: NA

Molecular weight: Translated: 10417; Mature: 10417

Theoretical pI: Translated: 11.30; Mature: 11.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDLIGPLVVTEKSYLLKDSLGKISVFAPVSATKRQVRSLFSERFKSIKILAVNSVLTC
CCCCCCCCEEECCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHEEEEEEECCEEEC
GKSKRFKGKSGKRSDRKKFILTVDGGSQLDLSRL
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKLDLIGPLVVTEKSYLLKDSLGKISVFAPVSATKRQVRSLFSERFKSIKILAVNSVLTC
CCCCCCCCEEECCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHEEEEEEECCEEEC
GKSKRFKGKSGKRSDRKKFILTVDGGSQLDLSRL
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA