Click here to switch to the map view.

The map label for this gene is rimN [H]

Identifier: 88608553

GI number: 88608553

Start: 505364

End: 505951

Strand: Reverse

Name: rimN [H]

Synonym: NSE_0579

Alternate gene names: 88608553

Gene position: 505951-505364 (Counterclockwise)

Preceding gene: 88608665

Following gene: 88608632

Centisome position: 58.9

GC content: 39.29

Gene sequence:

>588_bases
ATGATCTTTGAGACAGTTAGTTTGCTACGTGTTGGTGGGGTTGTTATCTTTCCAACTGAGACTGTGTATGCGCTTGCTTG
TGATGCATCAAATTATCGTGCCATGTTGCGGATATACGATATTAAACAAAGAAATTTCAGAAAGAGTTTGCCTATTATGG
TGGCAGGTATTTCAGACTTAGGGAGCTTTGCATCATTTAATGAATCTCAAGCCAGGCTGATACAAGAATGTTGTCCTGGT
CCAGTGACGTTCATACTTAAGCGTAAGAAAAGCGCTCATCTAAGGTTCAGGTTTCCGGAGAAAGTTGCAGTGAGAGTTCC
GGACTCAAAAGTAGCACTTAAAATCCTTAGAGGATTCAAACGGCCAGTTTTCGCTACCAGTGTGAATCTCTCAGGTAGAC
CAGCGGTAAGCAATTTTACTCAAATAGGTAGTTATATAAAAAAAAGAGTCAGTCGCATCATATGTGATAACCGTGAAGTT
AAAGGTACTGCTTCATCCATTATTGATATTTCTGGAAAAAGAGCCGTTTTAGTCCGAAAAGGAGCATTCAGCACATCTTT
TGTTGAAAATTTAGAGTTTATAGAATAG

Upstream 100 bases:

>100_bases
ACATGACGCATAAGTTAGCGTATGACGATCTGCTTACCAGGCTAAAAGTCAGTGGTGTTAGTCATGTGATGCCAGCACAC
GATGGTCTCTCTTTGGAGAT

Downstream 100 bases:

>100_bases
GATACTTTGCAGTTTTCAGACGGTGCTTATTATTATAAGCCCTACATTTGCCAATTCGGAATCTCAGGAATGTAGAAAAT
TTCACTGAATGAAATTCTGT

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MIFETVSLLRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLGSFASFNESQARLIQECCPG
PVTFILKRKKSAHLRFRFPEKVAVRVPDSKVALKILRGFKRPVFATSVNLSGRPAVSNFTQIGSYIKKRVSRIICDNREV
KGTASSIIDISGKRAVLVRKGAFSTSFVENLEFIE

Sequences:

>Translated_195_residues
MIFETVSLLRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLGSFASFNESQARLIQECCPG
PVTFILKRKKSAHLRFRFPEKVAVRVPDSKVALKILRGFKRPVFATSVNLSGRPAVSNFTQIGSYIKKRVSRIICDNREV
KGTASSIIDISGKRAVLVRKGAFSTSFVENLEFIE
>Mature_195_residues
MIFETVSLLRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLGSFASFNESQARLIQECCPG
PVTFILKRKKSAHLRFRFPEKVAVRVPDSKVALKILRGFKRPVFATSVNLSGRPAVSNFTQIGSYIKKRVSRIICDNREV
KGTASSIIDISGKRAVLVRKGAFSTSFVENLEFIE

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=185, Percent_Identity=30.2702702702703, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI2367210, Length=146, Percent_Identity=28.7671232876712, Blast_Score=71, Evalue=6e-14,
Organism=Drosophila melanogaster, GI78707274, Length=171, Percent_Identity=32.1637426900585, Blast_Score=77, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 21770; Mature: 21770

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFETVSLLRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDL
CCCHHHHHHHHCCEEEEECCEEEEEEECCCCCEEEEEEEECHHHHHHCCCCEEEECHHHH
GSFASFNESQARLIQECCPGPVTFILKRKKSAHLRFRFPEKVAVRVPDSKVALKILRGFK
HHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCEEEEECCCHHHHHHHHHHCC
RPVFATSVNLSGRPAVSNFTQIGSYIKKRVSRIICDNREVKGTASSIIDISGKRAVLVRK
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCEEEEEEC
GAFSTSFVENLEFIE
CCCCHHHHHHHHCCC
>Mature Secondary Structure
MIFETVSLLRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDL
CCCHHHHHHHHCCEEEEECCEEEEEEECCCCCEEEEEEEECHHHHHHCCCCEEEECHHHH
GSFASFNESQARLIQECCPGPVTFILKRKKSAHLRFRFPEKVAVRVPDSKVALKILRGFK
HHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCEEEEECCCHHHHHHHHHHCC
RPVFATSVNLSGRPAVSNFTQIGSYIKKRVSRIICDNREVKGTASSIIDISGKRAVLVRK
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCEEEEEEC
GAFSTSFVENLEFIE
CCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA