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The map label for this gene is secY

Identifier: 88608542

GI number: 88608542

Start: 232806

End: 234116

Strand: Direct

Name: secY

Synonym: NSE_0285

Alternate gene names: 88608542

Gene position: 232806-234116 (Clockwise)

Preceding gene: 88608546

Following gene: 88608637

Centisome position: 27.1

GC content: 39.51

Gene sequence:

>1311_bases
ATGAATCAATCGAACTTTGGATTACTGTTTTCATCTAAAGATCTGTTCCACCGGCTGTGCTTCTTGTTGGTGGCTCTTTT
GGTTTACAGGATTGGTACCTTTATAACTCTTCCAAGTGTCAATCCCGCGCATGTATCGGAGATCTTTAGTGCCAATCTTT
CATCTGGCATAATAGGGATGTTTAACACTTTTTCTGGAGGTGCTCTTGGGAGAATGACGCTATTTGCGCTCAACGTGATG
CCATACATAGTCTCGTCGATTGTAGTGCAGATATTTTTCTCGATGCTCAAGAGTGAAGGAAAAGTGAGTGCCGAGTTTAT
GAACGAGTCCAGGTTGTCATTTTATTCAAAATTGGTTGCGCTTTTTCTTGCTTTCTTTCAGGGTTTCATTATTGTTGCTG
GTCTCGAAAGGACGAAAGCCTTTGTTGGTGGTAATGAAGAATTTTATTCTTTGTTGAAATATACATCGGTTTTAACCTTG
GTTTGTGGAACATTCTCTTTGATTTGGCTTGGTCAGCAGATCAATTCTAGGGGTATAGGCAATGGTATGTCGTTGATAAT
TTTTGCCGGAATAGTTGCAGAGATGCCCGCTATTTTTGGCAATCTCTTTTCGGGTATTGGGTCTCCAGGTTCAGGCATTC
TTGGCATTTTTGTAAGTTTGTCTTTGCTTGTTTTTGTTGTTTTTTTGGTTGTTCTTGTGGAACGTGCTTCCAAGAATATT
CCTGTTCATTATCCACGTCGCAGGACTTGGGGTAGTACGCATGGAGACGCTGCTTCTAATATACCTGTGAAGATTAACGT
TTCAGGTGTTATACCTCCAATCTTTGCTAATGCGCTTATTTTATTTCCTCTGACACTGGCGAATTTCTCAGCGGAGAGCC
ATCTTGGGGAATTCATTATTAGGTATTTTTCAGTTGGTCAACCACTGTATTTTCTGTTACATTCTTGTTTATTGGTATTT
TTCTGTTTTTTCTATAGTGATTTTGTTTTTAACACAACTGAGATTTCTGACTCTTTAAAGAAGGGTGAGGCAATTGTTGC
GGGTAGAAGGCCTGGCATTTCGACTAAGAGGCATCTTGATTATGTTCTTAGGCGTATCACGGTTGTTGGTGCTGCGTATC
TTGTCTGTATCTGTGTGGTGCCTGAGATTTTTCGTAACTATTTTGGTTTTGATGCTATCATCAGCGGTACGAGTTTACTG
ATAATTGTAAATGTTATAACAGATCTGCTCTCTCAGATTCAGGTGCTTCTTTTCAGTTCTCATTATTCTTCTTTTTTGAA
AAAGGGAGGAATGGTTTTTAATAAGCGATGA

Upstream 100 bases:

>100_bases
TTTTGGCTTCTGTTGATGTCTCACTTGTTGATCTTAAGATTTCTTCCTGTGAGTACGACAAAATTTCTGTTTCAGCTAGA
CGTGCTTTTGGATTATCCGA

Downstream 100 bases:

>100_bases
ATTTAGTAATGTTTGGTCCACCTGGCTCTGGTAAGGGTACGCAGTCCTCACGGATTTGTTCTTATGTTTCGGCCTCCGTG
GTTGACTGTGGTAAGCTTTT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MNQSNFGLLFSSKDLFHRLCFLLVALLVYRIGTFITLPSVNPAHVSEIFSANLSSGIIGMFNTFSGGALGRMTLFALNVM
PYIVSSIVVQIFFSMLKSEGKVSAEFMNESRLSFYSKLVALFLAFFQGFIIVAGLERTKAFVGGNEEFYSLLKYTSVLTL
VCGTFSLIWLGQQINSRGIGNGMSLIIFAGIVAEMPAIFGNLFSGIGSPGSGILGIFVSLSLLVFVVFLVVLVERASKNI
PVHYPRRRTWGSTHGDAASNIPVKINVSGVIPPIFANALILFPLTLANFSAESHLGEFIIRYFSVGQPLYFLLHSCLLVF
FCFFYSDFVFNTTEISDSLKKGEAIVAGRRPGISTKRHLDYVLRRITVVGAAYLVCICVVPEIFRNYFGFDAIISGTSLL
IIVNVITDLLSQIQVLLFSSHYSSFLKKGGMVFNKR

Sequences:

>Translated_436_residues
MNQSNFGLLFSSKDLFHRLCFLLVALLVYRIGTFITLPSVNPAHVSEIFSANLSSGIIGMFNTFSGGALGRMTLFALNVM
PYIVSSIVVQIFFSMLKSEGKVSAEFMNESRLSFYSKLVALFLAFFQGFIIVAGLERTKAFVGGNEEFYSLLKYTSVLTL
VCGTFSLIWLGQQINSRGIGNGMSLIIFAGIVAEMPAIFGNLFSGIGSPGSGILGIFVSLSLLVFVVFLVVLVERASKNI
PVHYPRRRTWGSTHGDAASNIPVKINVSGVIPPIFANALILFPLTLANFSAESHLGEFIIRYFSVGQPLYFLLHSCLLVF
FCFFYSDFVFNTTEISDSLKKGEAIVAGRRPGISTKRHLDYVLRRITVVGAAYLVCICVVPEIFRNYFGFDAIISGTSLL
IIVNVITDLLSQIQVLLFSSHYSSFLKKGGMVFNKR
>Mature_436_residues
MNQSNFGLLFSSKDLFHRLCFLLVALLVYRIGTFITLPSVNPAHVSEIFSANLSSGIIGMFNTFSGGALGRMTLFALNVM
PYIVSSIVVQIFFSMLKSEGKVSAEFMNESRLSFYSKLVALFLAFFQGFIIVAGLERTKAFVGGNEEFYSLLKYTSVLTL
VCGTFSLIWLGQQINSRGIGNGMSLIIFAGIVAEMPAIFGNLFSGIGSPGSGILGIFVSLSLLVFVVFLVVLVERASKNI
PVHYPRRRTWGSTHGDAASNIPVKINVSGVIPPIFANALILFPLTLANFSAESHLGEFIIRYFSVGQPLYFLLHSCLLVF
FCFFYSDFVFNTTEISDSLKKGEAIVAGRRPGISTKRHLDYVLRRITVVGAAYLVCICVVPEIFRNYFGFDAIISGTSLL
IIVNVITDLLSQIQVLLFSSHYSSFLKKGGMVFNKR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=426, Percent_Identity=39.906103286385, Blast_Score=268, Evalue=5e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47985; Mature: 47985

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS00755 SECY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNQSNFGLLFSSKDLFHRLCFLLVALLVYRIGTFITLPSVNPAHVSEIFSANLSSGIIGM
CCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCCHHH
FNTFSGGALGRMTLFALNVMPYIVSSIVVQIFFSMLKSEGKVSAEFMNESRLSFYSKLVA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LFLAFFQGFIIVAGLERTKAFVGGNEEFYSLLKYTSVLTLVCGTFSLIWLGQQINSRGIG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NGMSLIIFAGIVAEMPAIFGNLFSGIGSPGSGILGIFVSLSLLVFVVFLVVLVERASKNI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PVHYPRRRTWGSTHGDAASNIPVKINVSGVIPPIFANALILFPLTLANFSAESHLGEFII
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
RYFSVGQPLYFLLHSCLLVFFCFFYSDFVFNTTEISDSLKKGEAIVAGRRPGISTKRHLD
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEECCCCCCCHHHHHH
YVLRRITVVGAAYLVCICVVPEIFRNYFGFDAIISGTSLLIIVNVITDLLSQIQVLLFSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
HYSSFLKKGGMVFNKR
HHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA