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The map label for this gene is 88608532

Identifier: 88608532

GI number: 88608532

Start: 142696

End: 143610

Strand: Direct

Name: 88608532

Synonym: NSE_0173

Alternate gene names: NA

Gene position: 142696-143610 (Clockwise)

Preceding gene: 88608357

Following gene: 88607993

Centisome position: 16.61

GC content: 39.67

Gene sequence:

>915_bases
GTGTTCTTCGTGGTTTTGGGGAAGATTTTCCCTCTTTATCTGATGATACTGCTGGGCTACATTGCTGGTAGGGTGCTTAA
TACCGATCGTAATACCATCGCAACCCTCCTTTTATATCTCCTCTCACCGTTGGTCATATTAAACGGGTTACTTGGTGTGA
ACAATATGCAGAAGCTATTACTTCTTCCTGTAATTGTTTTTCTAACAAGTTGCTTCATGTGCTGGCTTGTGTATACAGTT
ACTCAGCTTTTTTATAATGATAGTCTCAGGAACATAATCGCATTTAGTTCAGGTAGCTTTAACACGGGTCAATTTGGTCT
TCCCGTCGCACTTATGATTGTTGATGCTGAAACCGTTGGGATATATATCCTTGCATACAGTGGAATCATTCTTTTTGAGA
ACACATATGGTTTCTATGTTGCGTCTAAAGGAGCATTTTCTCCGATGTATTGTATAAAAAAGACGCTAAGCCTGCCTCCG
CTACACGGGATAGTAATAGCATTTTCTATGAAGCTTTTGTGTTTACACTTTCCTGAATTTTTGGATCCATTTTTTGCAAA
CCTGAGAAGCACCTATGTGACTCTTGGTATGAGTACTATTGGTCTTGGTCTGGGCACTATAAAAAGGTTCGAAGTGGATT
GGAAGTGCATTGGAATCACGATGTTTGTAAAGTACTTTCTTTGGCCGGTTCTAATGCTTAGTCTTGTTTATCTTGACGCC
TCCTTTTTGCACGTTTTTGATAACAACAAAGTGTACAACGCCATGCTGATCCTTTCTGTGGTCCCAATTTCTGTTAGTAC
CATGCTTTTGGGTTGTGTTTTCAATTATCCGGCAGAGAAGGTTGCAGTTGTCGTTCTCATAAGTACGCTTACTGGCATAA
TATACATTCCTTTGGTGGTGAGATTCTTTTTTTAA

Upstream 100 bases:

>100_bases
TGTCAACTTGGGCATATTAATCTTCTGTATACTGTACTTCTTTCATTTTATAGAAAATTGTCGCTATTATAGTTTAGAGT
TGTCCTGTTAGCAAAAGTAG

Downstream 100 bases:

>100_bases
ATCTTAATAAAGTAATTTCTTATTTTGTCAGTATGTATAACTCTGATTTGTAAATTTGCGAAAGAAAGTATTTTTTGAGG
TTCGTTGGGTCATCGGTAAC

Product: putative transporter

Products: NA

Alternate protein names: Permease; Auxin Efflux Carrier Family Protein

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MFFVVLGKIFPLYLMILLGYIAGRVLNTDRNTIATLLLYLLSPLVILNGLLGVNNMQKLLLLPVIVFLTSCFMCWLVYTV
TQLFYNDSLRNIIAFSSGSFNTGQFGLPVALMIVDAETVGIYILAYSGIILFENTYGFYVASKGAFSPMYCIKKTLSLPP
LHGIVIAFSMKLLCLHFPEFLDPFFANLRSTYVTLGMSTIGLGLGTIKRFEVDWKCIGITMFVKYFLWPVLMLSLVYLDA
SFLHVFDNNKVYNAMLILSVVPISVSTMLLGCVFNYPAEKVAVVVLISTLTGIIYIPLVVRFFF

Sequences:

>Translated_304_residues
MFFVVLGKIFPLYLMILLGYIAGRVLNTDRNTIATLLLYLLSPLVILNGLLGVNNMQKLLLLPVIVFLTSCFMCWLVYTV
TQLFYNDSLRNIIAFSSGSFNTGQFGLPVALMIVDAETVGIYILAYSGIILFENTYGFYVASKGAFSPMYCIKKTLSLPP
LHGIVIAFSMKLLCLHFPEFLDPFFANLRSTYVTLGMSTIGLGLGTIKRFEVDWKCIGITMFVKYFLWPVLMLSLVYLDA
SFLHVFDNNKVYNAMLILSVVPISVSTMLLGCVFNYPAEKVAVVVLISTLTGIIYIPLVVRFFF
>Mature_304_residues
MFFVVLGKIFPLYLMILLGYIAGRVLNTDRNTIATLLLYLLSPLVILNGLLGVNNMQKLLLLPVIVFLTSCFMCWLVYTV
TQLFYNDSLRNIIAFSSGSFNTGQFGLPVALMIVDAETVGIYILAYSGIILFENTYGFYVASKGAFSPMYCIKKTLSLPP
LHGIVIAFSMKLLCLHFPEFLDPFFANLRSTYVTLGMSTIGLGLGTIKRFEVDWKCIGITMFVKYFLWPVLMLSLVYLDA
SFLHVFDNNKVYNAMLILSVVPISVSTMLLGCVFNYPAEKVAVVVLISTLTGIIYIPLVVRFFF

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34059; Mature: 34059

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFVVLGKIFPLYLMILLGYIAGRVLNTDRNTIATLLLYLLSPLVILNGLLGVNNMQKLL
CEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LLPVIVFLTSCFMCWLVYTVTQLFYNDSLRNIIAFSSGSFNTGQFGLPVALMIVDAETVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEEEECHHHE
IYILAYSGIILFENTYGFYVASKGAFSPMYCIKKTLSLPPLHGIVIAFSMKLLCLHFPEF
EEEEEECCEEEEECCCCEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHH
LDPFFANLRSTYVTLGMSTIGLGLGTIKRFEVDWKCIGITMFVKYFLWPVLMLSLVYLDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHH
SFLHVFDNNKVYNAMLILSVVPISVSTMLLGCVFNYPAEKVAVVVLISTLTGIIYIPLVV
HHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RFFF
HHHC
>Mature Secondary Structure
MFFVVLGKIFPLYLMILLGYIAGRVLNTDRNTIATLLLYLLSPLVILNGLLGVNNMQKLL
CEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LLPVIVFLTSCFMCWLVYTVTQLFYNDSLRNIIAFSSGSFNTGQFGLPVALMIVDAETVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEEEECHHHE
IYILAYSGIILFENTYGFYVASKGAFSPMYCIKKTLSLPPLHGIVIAFSMKLLCLHFPEF
EEEEEECCEEEEECCCCEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHH
LDPFFANLRSTYVTLGMSTIGLGLGTIKRFEVDWKCIGITMFVKYFLWPVLMLSLVYLDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHH
SFLHVFDNNKVYNAMLILSVVPISVSTMLLGCVFNYPAEKVAVVVLISTLTGIIYIPLVV
HHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RFFF
HHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA