Click here to switch to the map view.

The map label for this gene is hscB [C]

Identifier: 88608404

GI number: 88608404

Start: 243537

End: 244016

Strand: Reverse

Name: hscB [C]

Synonym: NSE_0299

Alternate gene names: 88608404

Gene position: 244016-243537 (Counterclockwise)

Preceding gene: 88608336

Following gene: 88608318

Centisome position: 28.41

GC content: 37.71

Gene sequence:

>480_bases
ATGCAAAAGAAAAATTATTTCAGGGTCCTAGAATTGGAAGAGAGGTTCACTTTTGACCCAGCAGATTCACTGGAGAAATC
TTATCTCGCTCTGCAAAAAGAATTGAGAAGCACGTCTAATTCAGTTAAGGAAGATTCGGCTATCTACGAGAAGGTTCAAT
TGCTCAACAAAGCGTATCATCTTTTAAAAGACCCAGTTAATAGAGCACAACACTTACTAGAATTATCTGGTTACACTAAC
CTCTCCGACAAAAGCTGTCCTGGACTACTCATGCAAATCGTCGCACTAGAAGAAAAAGTGGAAAATGGCAGAACTGTAGA
AGTCCTACCATTAGTAGAAAACATGTACCTCGATGCTCTACAACAAATGGAAGAAGCTTTCAATTGCAAAGATTATGACT
CAGCAAGCTCGCATTGTATGGGACTCAAATATTTAGAAAAATTAAAACAAAGGATCTATGCAAGTGATAACAATCAATGA

Upstream 100 bases:

>100_bases
ATACTAAATTGAATGAGACAGGTGCGGCACTAAAATCCACTCTAAGCAGAGTAGGCAAGGACTTTCCTTATTTGAAACGC
AATTAGATCAATCGTATGAG

Downstream 100 bases:

>100_bases
GCCAAGACAAAAACTTGATCGTGAAGTCATCATAGGTATAGACTTTGGAACGACCAATTCTCTTGTTTGTATATTCGACG
GTAGCAAATGCGTTGTTATT

Product: putative chaperone protein HscB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MQKKNYFRVLELEERFTFDPADSLEKSYLALQKELRSTSNSVKEDSAIYEKVQLLNKAYHLLKDPVNRAQHLLELSGYTN
LSDKSCPGLLMQIVALEEKVENGRTVEVLPLVENMYLDALQQMEEAFNCKDYDSASSHCMGLKYLEKLKQRIYASDNNQ

Sequences:

>Translated_159_residues
MQKKNYFRVLELEERFTFDPADSLEKSYLALQKELRSTSNSVKEDSAIYEKVQLLNKAYHLLKDPVNRAQHLLELSGYTN
LSDKSCPGLLMQIVALEEKVENGRTVEVLPLVENMYLDALQQMEEAFNCKDYDSASSHCMGLKYLEKLKQRIYASDNNQ
>Mature_159_residues
MQKKNYFRVLELEERFTFDPADSLEKSYLALQKELRSTSNSVKEDSAIYEKVQLLNKAYHLLKDPVNRAQHLLELSGYTN
LSDKSCPGLLMQIVALEEKVENGRTVEVLPLVENMYLDALQQMEEAFNCKDYDSASSHCMGLKYLEKLKQRIYASDNNQ

Specific function: Co-Chaperone Involved In The Maturation Of Iron-Sulfur Cluster-Containing Proteins. Seems To Help Targeting Proteins To Be Folded Toward Hsca. [C]

COG id: COG1076

COG function: function code O; DnaJ-domain-containing proteins 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18391; Mature: 18391

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKKNYFRVLELEERFTFDPADSLEKSYLALQKELRSTSNSVKEDSAIYEKVQLLNKAYH
CCCCCHHHHEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLKDPVNRAQHLLELSGYTNLSDKSCPGLLMQIVALEEKVENGRTVEVLPLVENMYLDAL
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
QQMEEAFNCKDYDSASSHCMGLKYLEKLKQRIYASDNNQ
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQKKNYFRVLELEERFTFDPADSLEKSYLALQKELRSTSNSVKEDSAIYEKVQLLNKAYH
CCCCCHHHHEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLKDPVNRAQHLLELSGYTNLSDKSCPGLLMQIVALEEKVENGRTVEVLPLVENMYLDAL
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
QQMEEAFNCKDYDSASSHCMGLKYLEKLKQRIYASDNNQ
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA