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The map label for this gene is ydhJ [C]

Identifier: 88608363

GI number: 88608363

Start: 120679

End: 121725

Strand: Direct

Name: ydhJ [C]

Synonym: NSE_0151

Alternate gene names: 88608363

Gene position: 120679-121725 (Clockwise)

Preceding gene: 88607988

Following gene: 88608565

Centisome position: 14.05

GC content: 45.65

Gene sequence:

>1047_bases
ATGAGGTTCGTTTTGCCGACGGTCTTGTTTGGCCTAGTACTTCTGGTACTGGCTTTCAAGTTCATAGGGGGTGGCGTTCG
TTCTGAGAATGAAAAAGCAGTCTCAGAAGCAAGTTCGTTGCGTACCATGGTTGTCGAACCAGTATTGCGGGCGATTGTTG
TAAATGGCTACGGAACTGTTGACGCCGCACAGCGTTACTTTTTGTATTCGCAGGTGTCTGGGGAGGTAGTGGAAAAACTT
GCTGGGGACGGGCAGATATTGCAAGAGGGTGATACGTTGCTCCGTCTTAATAGTGAGGTGTGTGAAGCTCAATTGGAAAG
TTTGAAAGCTTTGCTAGAAGAAAGGAAAATTGAGTACCGGGCTGCTAAAGAACTTAAGGATAGTGGCCATTCGTCGGAAG
TAAAACTTTCAGCTGCTCTTGCTGGTCTCAAAAAAGCTGAAGCGGATCTGAAGGCCTTAGAAAGGCAAATGGAAAAACAC
GCAATTAAGGCTCCAGTTTCGGGCGTACTTGGGAAGATAAATGTTGCTGTTGGGGATGTCGTATCACCAGGGGCGACACT
CATAGCAGAATTGATCCCATTCGGGAACTATATTGTGCGAATGAATGTTTCAGAAGCAGACATTTTGAACTTGAGGGAAG
GTATGGAAGTTGAGATTATTCTTCCCGAGATAGGGGCTGTAAATGGAAGAACAAGGTTTGTTTCACTTGTTCCAAGTGGT
CCTACAGGAACATTTCCCGTTGAAATTGTGGTTGAAGATAATGAATGGAATAGAAATCGTGTACCGCTCGGAATGGTAGT
CGATACAAGGGTGGTTATAGGTAGAAAATTTCTCTACAAAGTGCCTGCTAGTGCGCTCTTCCTAGGAAAAGATGGGAAGA
TTGCCGTAGAGATTTTCAAAGATGGTTTACTCCGGCCCATTGAGGTTGGGATAGTGGAAGAAGAGGGCGAAAATTTTTGG
ATACAGCAGAGCACAGTTGGGGGACAGCTAGAAGTCGTTGTTGCTGGTGGAGGAGTTTTCAGACGCCAGGAAATTAAAGC
GAGCTGA

Upstream 100 bases:

>100_bases
TAGGTCGGTTCGATTCCGGCTCCGGCCTTTCTTGTTGTGTTTACCACTTCCGTAGTTGTTTCTTGTTGGGTTTTTTGTAG
CTCCTTTTTGGTTTTTTGCT

Downstream 100 bases:

>100_bases
GCTAGGTTTCTTTTTCTTTGTTTTTTGGTTACTAATTTTACAGAGGTGGCAGGGCGCGATTTTTTGTGTTGGATATCTTT
TTTACTCTCCAGGGCTATTT

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: Efflux Transporter RND Family MFP Subunit; Membrane-Fusion Protein; Secretion Protein HlyD; Efflux System Protein; Periplasmic Component Of Efflux System; Auxiliary Transport Protein MFP Family; Membrane-Fusion Protein AcrA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MRFVLPTVLFGLVLLVLAFKFIGGGVRSENEKAVSEASSLRTMVVEPVLRAIVVNGYGTVDAAQRYFLYSQVSGEVVEKL
AGDGQILQEGDTLLRLNSEVCEAQLESLKALLEERKIEYRAAKELKDSGHSSEVKLSAALAGLKKAEADLKALERQMEKH
AIKAPVSGVLGKINVAVGDVVSPGATLIAELIPFGNYIVRMNVSEADILNLREGMEVEIILPEIGAVNGRTRFVSLVPSG
PTGTFPVEIVVEDNEWNRNRVPLGMVVDTRVVIGRKFLYKVPASALFLGKDGKIAVEIFKDGLLRPIEVGIVEEEGENFW
IQQSTVGGQLEVVVAGGGVFRRQEIKAS

Sequences:

>Translated_348_residues
MRFVLPTVLFGLVLLVLAFKFIGGGVRSENEKAVSEASSLRTMVVEPVLRAIVVNGYGTVDAAQRYFLYSQVSGEVVEKL
AGDGQILQEGDTLLRLNSEVCEAQLESLKALLEERKIEYRAAKELKDSGHSSEVKLSAALAGLKKAEADLKALERQMEKH
AIKAPVSGVLGKINVAVGDVVSPGATLIAELIPFGNYIVRMNVSEADILNLREGMEVEIILPEIGAVNGRTRFVSLVPSG
PTGTFPVEIVVEDNEWNRNRVPLGMVVDTRVVIGRKFLYKVPASALFLGKDGKIAVEIFKDGLLRPIEVGIVEEEGENFW
IQQSTVGGQLEVVVAGGGVFRRQEIKAS
>Mature_348_residues
MRFVLPTVLFGLVLLVLAFKFIGGGVRSENEKAVSEASSLRTMVVEPVLRAIVVNGYGTVDAAQRYFLYSQVSGEVVEKL
AGDGQILQEGDTLLRLNSEVCEAQLESLKALLEERKIEYRAAKELKDSGHSSEVKLSAALAGLKKAEADLKALERQMEKH
AIKAPVSGVLGKINVAVGDVVSPGATLIAELIPFGNYIVRMNVSEADILNLREGMEVEIILPEIGAVNGRTRFVSLVPSG
PTGTFPVEIVVEDNEWNRNRVPLGMVVDTRVVIGRKFLYKVPASALFLGKDGKIAVEIFKDGLLRPIEVGIVEEEGENFW
IQQSTVGGQLEVVVAGGGVFRRQEIKAS

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37726; Mature: 37726

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFVLPTVLFGLVLLVLAFKFIGGGVRSENEKAVSEASSLRTMVVEPVLRAIVVNGYGTV
CCEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCH
DAAQRYFLYSQVSGEVVEKLAGDGQILQEGDTLLRLNSEVCEAQLESLKALLEERKIEYR
HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH
AAKELKDSGHSSEVKLSAALAGLKKAEADLKALERQMEKHAIKAPVSGVLGKINVAVGDV
HHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEEEECCC
VSPGATLIAELIPFGNYIVRMNVSEADILNLREGMEVEIILPEIGAVNGRTRFVSLVPSG
CCCHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEECCC
PTGTFPVEIVVEDNEWNRNRVPLGMVVDTRVVIGRKFLYKVPASALFLGKDGKIAVEIFK
CCCCEEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEC
DGLLRPIEVGIVEEEGENFWIQQSTVGGQLEVVVAGGGVFRRQEIKAS
CCCCCEEEEEEEEECCCEEEEEECCCCCEEEEEEECCCEEECCCCCCC
>Mature Secondary Structure
MRFVLPTVLFGLVLLVLAFKFIGGGVRSENEKAVSEASSLRTMVVEPVLRAIVVNGYGTV
CCEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCH
DAAQRYFLYSQVSGEVVEKLAGDGQILQEGDTLLRLNSEVCEAQLESLKALLEERKIEYR
HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH
AAKELKDSGHSSEVKLSAALAGLKKAEADLKALERQMEKHAIKAPVSGVLGKINVAVGDV
HHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEEEECCC
VSPGATLIAELIPFGNYIVRMNVSEADILNLREGMEVEIILPEIGAVNGRTRFVSLVPSG
CCCHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEECCC
PTGTFPVEIVVEDNEWNRNRVPLGMVVDTRVVIGRKFLYKVPASALFLGKDGKIAVEIFK
CCCCEEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEC
DGLLRPIEVGIVEEEGENFWIQQSTVGGQLEVVVAGGGVFRRQEIKAS
CCCCCEEEEEEEEECCCEEEEEECCCCCEEEEEEECCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA