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The map label for this gene is infA

Identifier: 88608323

GI number: 88608323

Start: 787815

End: 788096

Strand: Reverse

Name: infA

Synonym: NSE_0882

Alternate gene names: 88608323

Gene position: 788096-787815 (Counterclockwise)

Preceding gene: 88608512

Following gene: 88608209

Centisome position: 91.75

GC content: 42.91

Gene sequence:

>282_bases
ATGCCTAGAGAAGATGAAAGGCGCTTCGTAGGTGAGGTAATCGAGGTCCTTAGGGGACCCGAGTTTCGAGTAAGACTTGA
AAATGGGAGAGAGATACTAGCGCATTCCTGTGGTAAAATGCGCAGAAAAAAAATAAAAATTATCCTTAGTGATAAGGTAG
TTGTCTCGATGTTTCTTCAGTATGACACAAACAGGGGGATCATTGTCGAAAGAGAGGGATTCCGGAAGAAGCGTATGGAT
GATCTTGGTGAGGGAACTACTAAAGGTAAGACACGAAAATGA

Upstream 100 bases:

>100_bases
CATTACTTGGTATGAAGATCAAGTTAAGATTTCATATAAGTTCATTTGACAGAGTTAAAGTTGTAAGTTTGTAAAATCCG
TATGTTGAGGAAGCATTGTT

Downstream 100 bases:

>100_bases
ATCACTCAGTCACGTTGACCCTCTACTTACCTGTTGTGTGATATGTATTCCGACTTTATTCTGGGTTCTTCGTCAAAATG
CAGGAGTCAGCTTCTTGAGG

Product: translation initiation factor IF-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MPREDERRFVGEVIEVLRGPEFRVRLENGREILAHSCGKMRRKKIKIILSDKVVVSMFLQYDTNRGIIVEREGFRKKRMD
DLGEGTTKGKTRK

Sequences:

>Translated_93_residues
MPREDERRFVGEVIEVLRGPEFRVRLENGREILAHSCGKMRRKKIKIILSDKVVVSMFLQYDTNRGIIVEREGFRKKRMD
DLGEGTTKGKTRK
>Mature_92_residues
PREDERRFVGEVIEVLRGPEFRVRLENGREILAHSCGKMRRKKIKIILSDKVVVSMFLQYDTNRGIIVEREGFRKKRMDD
LGEGTTKGKTRK

Specific function: No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3 [H]

COG id: COG0361

COG function: function code J; Translation initiation factor 1 (IF-1)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR022967
- InterPro:   IPR006196
- InterPro:   IPR004368 [H]

Pfam domain/function: PF01176 eIF-1a [H]

EC number: NA

Molecular weight: Translated: 10935; Mature: 10804

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: PS50832 S1_IF1_TYPE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPREDERRFVGEVIEVLRGPEFRVRLENGREILAHSCGKMRRKKIKIILSDKVVVSMFLQ
CCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHEEEEECCHHHHHHHHH
YDTNRGIIVEREGFRKKRMDDLGEGTTKGKTRK
CCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PREDERRFVGEVIEVLRGPEFRVRLENGREILAHSCGKMRRKKIKIILSDKVVVSMFLQ
CCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHEEEEECCHHHHHHHHH
YDTNRGIIVEREGFRKKRMDDLGEGTTKGKTRK
CCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA