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The map label for this gene is rpoZ

Identifier: 88608206

GI number: 88608206

Start: 29895

End: 30281

Strand: Direct

Name: rpoZ

Synonym: NSE_0039

Alternate gene names: 88608206

Gene position: 29895-30281 (Clockwise)

Preceding gene: 88608129

Following gene: 88608739

Centisome position: 3.48

GC content: 46.51

Gene sequence:

>387_bases
ATGCGCGATTGGCGTTTTTTCGAGGATGGGAATTTGTCCTGTTCCAGATTTGAGCTGGTGATACTTGCGAGCCAGAGGGC
CTATGATTTGCAAAGTGGTTCCTTGCCTGATGTCCAACACGAAGAAAGTGATAAGAGCCCTGTAATTGCGCTAAAGGAGC
TATACTCTCTAAGCATGGATTACGAGAAACTCTTCCATGCTGCCATAAGGAGAATAGTTCATTTTTCAGGTTCTGGTTAT
GCTGGTATTTCGTCGGATTCGGGTGCGGCTAGACCTCATGCTAGAGGCCTCGTAGAACACATTGATCACGATCTTGTTGA
GGAGCGTGACTCGGAAGTTTTCTCTGATTCTGAGTTTTCCTTTGCTGAAGATGAGGGGGATGAGTAG

Upstream 100 bases:

>100_bases
GTTTTTTATCCTTCTTGGTTGGAAGGTTGATGTTAGGTTGACAAAGTAAGTTGTTGCTTCCGGTTTTTTGTGTTACCCTA
GGCCTTTCTTTTGTCTTGCG

Downstream 100 bases:

>100_bases
GTAGGGTTTTTGCCTCTGTAGATGCAGGTTTACCATACTCCCGAGCTGCTTCCCCACCCTTCAGTCGTTACCTTTGGTAA
CTTTGACGGGGTACATTTAG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MRDWRFFEDGNLSCSRFELVILASQRAYDLQSGSLPDVQHEESDKSPVIALKELYSLSMDYEKLFHAAIRRIVHFSGSGY
AGISSDSGAARPHARGLVEHIDHDLVEERDSEVFSDSEFSFAEDEGDE

Sequences:

>Translated_128_residues
MRDWRFFEDGNLSCSRFELVILASQRAYDLQSGSLPDVQHEESDKSPVIALKELYSLSMDYEKLFHAAIRRIVHFSGSGY
AGISSDSGAARPHARGLVEHIDHDLVEERDSEVFSDSEFSFAEDEGDE
>Mature_128_residues
MRDWRFFEDGNLSCSRFELVILASQRAYDLQSGSLPDVQHEESDKSPVIALKELYSLSMDYEKLFHAAIRRIVHFSGSGY
AGISSDSGAARPHARGLVEHIDHDLVEERDSEVFSDSEFSFAEDEGDE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_NEOSM (Q2GF15)

Other databases:

- EMBL:   CP000237
- RefSeq:   YP_505941.1
- STRING:   Q2GF15
- GeneID:   3931676
- GenomeReviews:   CP000237_GR
- KEGG:   nse:NSE_0039
- TIGR:   NSE_0039
- eggNOG:   NOG78251
- OMA:   IRRIVHF
- ProtClustDB:   PRK00392
- BioCyc:   NSEN222891:NSE_0039-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14459; Mature: 14459

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDWRFFEDGNLSCSRFELVILASQRAYDLQSGSLPDVQHEESDKSPVIALKELYSLSMD
CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
YEKLFHAAIRRIVHFSGSGYAGISSDSGAARPHARGLVEHIDHDLVEERDSEVFSDSEFS
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FAEDEGDE
CCCCCCCC
>Mature Secondary Structure
MRDWRFFEDGNLSCSRFELVILASQRAYDLQSGSLPDVQHEESDKSPVIALKELYSLSMD
CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
YEKLFHAAIRRIVHFSGSGYAGISSDSGAARPHARGLVEHIDHDLVEERDSEVFSDSEFS
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FAEDEGDE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA