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The map label for this gene is sdhC

Identifier: 88608119

GI number: 88608119

Start: 37788

End: 38210

Strand: Direct

Name: sdhC

Synonym: NSE_0047

Alternate gene names: 88608119

Gene position: 37788-38210 (Clockwise)

Preceding gene: 88608759

Following gene: 88608060

Centisome position: 4.4

GC content: 38.77

Gene sequence:

>423_bases
TTGTTTCGCTGTCTTTGCGTACTTTCTTTCTCTTGTTTCTTGTTCATGAGATCTCCTCTTTCCCCTTCTCTTTTTGCCTA
TCGTTTTCCTCTGGCTGCGATCTTGTCAATAAGTCATAGACTTTCAGGGGCGTTTTTGTTTTTTTATACAGGTTTTTTTT
CTTGGTATGTTTTTGCTTGCTTCTACATGCCGTCTTCATTTTTGCACACTGTCCTGAGCCCATTTTTTTCGGGTTATTTG
GCTGGCTTTCTCTTGTGTTTCTTTCTTTTCTTTTTTTGCTATCATCTTTGTAGTGGGGTTAGGCACCTTTTCTGGGATTT
TTGTACTGGTCTTTCCCAGGCTTCTGTGAAGGTAAGTAACTTTCTCGTTATTATTGCTGCCCTTTTGCTGTTCTTCTTAA
TGTTTTCTCTTACTTACCTATGA

Upstream 100 bases:

>100_bases
TCTACGGTGGGGTGGGTGACTGGGGTTAAGTCGTAACAAGGTAGCCGTAGGTGAACCTGCGGCTGGATTACCTCCTTTTA
TTTAGGCGAAAGCCTAACAT

Downstream 100 bases:

>100_bases
GATGTGTTGTTAGGAGTTGGTTAGCTCAACGCATTACAGCTCTTTTGCTGTTTTTGTTATTTATCTTTTTACTTTTCTCG
CTTCGTTCTTCTAAATGGAT

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; ubiquinol

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MFRCLCVLSFSCFLFMRSPLSPSLFAYRFPLAAILSISHRLSGAFLFFYTGFFSWYVFACFYMPSSFLHTVLSPFFSGYL
AGFLLCFFLFFFCYHLCSGVRHLFWDFCTGLSQASVKVSNFLVIIAALLLFFLMFSLTYL

Sequences:

>Translated_140_residues
MFRCLCVLSFSCFLFMRSPLSPSLFAYRFPLAAILSISHRLSGAFLFFYTGFFSWYVFACFYMPSSFLHTVLSPFFSGYL
AGFLLCFFLFFFCYHLCSGVRHLFWDFCTGLSQASVKVSNFLVIIAALLLFFLMFSLTYL
>Mature_140_residues
MFRCLCVLSFSCFLFMRSPLSPSLFAYRFPLAAILSISHRLSGAFLFFYTGFFSWYVFACFYMPSSFLHTVLSPFFSGYL
AGFLLCFFLFFFCYHLCSGVRHLFWDFCTGLSQASVKVSNFLVIIAALLLFFLMFSLTYL

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.5.1

Molecular weight: Translated: 16234; Mature: 16234

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
5.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
8.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRCLCVLSFSCFLFMRSPLSPSLFAYRFPLAAILSISHRLSGAFLFFYTGFFSWYVFAC
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYMPSSFLHTVLSPFFSGYLAGFLLCFFLFFFCYHLCSGVRHLFWDFCTGLSQASVKVSN
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
FLVIIAALLLFFLMFSLTYL
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFRCLCVLSFSCFLFMRSPLSPSLFAYRFPLAAILSISHRLSGAFLFFYTGFFSWYVFAC
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYMPSSFLHTVLSPFFSGYLAGFLLCFFLFFFCYHLCSGVRHLFWDFCTGLSQASVKVSN
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
FLVIIAALLLFFLMFSLTYL
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; ubiquinone

Specific reaction: succinate + ubiquinone = fumarate + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA