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The map label for this gene is ydaL [C]

Identifier: 88608112

GI number: 88608112

Start: 138386

End: 139495

Strand: Reverse

Name: ydaL [C]

Synonym: NSE_0169

Alternate gene names: 88608112

Gene position: 139495-138386 (Counterclockwise)

Preceding gene: 88607979

Following gene: 88608100

Centisome position: 16.24

GC content: 39.73

Gene sequence:

>1110_bases
ATGGAATTGCAGGGGAAAGCATATGTTTTACCTAAACAATCGCAATCCAGTGTGTGCATATTCGCAGATAGTGCAAGTAC
TGGCATCCTAAAATGCAACGCGCTTGTAACGAACAAGCCTCAGCTATTTCTCGTGATAAAAACAACAAATTCTGTCCCTT
TACTACTCTCTGATCATATAAACCGTGTTATAGGGATCGCAAATGTAGATCTCAATAGGTCAGATGAATTAGTCCAAAAT
ACGGTTCTTAGGATGTTAGAGTCTGGCGCTGAAATGAGGTATATAAACGCTGTCCTAGGACCGTACATGCACGACAAATA
CAACAACACGAAAAACGGACTCCCTAGCAGTGATACAAGCACGAGTTTCGTACAATACCCTTCCTGGAAATGTACTATCA
ATTTACATGACCATTCCATAAAATTATTAGAGAAGGTGGGAGTACGAAGTATACGGGGCATAAACATGTATACTCACTCA
CACGGAAAGGAAAGTACTCGGGATAATCCTGACGTGTCTAAAGAAGATAGTAAAACTTGCAACATAAGCATGATTTCTAT
CAGCACGACAGAAAATTCTCACATGAGTATGCAGTGTGAAAGCACAACAGACTGGGACAGTTTTATACAAGATATCACAA
AGGTTTCAGACAGATTTGCCTACCCATGTCATAACCTAAGAAAACCTGCGAGGGACATTACACAAAACATAGAAGGCAAA
GTCGAGATATACAATAAATCAAGTAGCTTGAACACAAATAATCTTGATTTCGCTAAAAGTGCGGATCCTGATTTTTTGCG
AAAAATCAAACGCGGAAAGATCAATATAGATAAAACACTAGATCTTCACGGTGAAACTATGGAAAGCGCTTACCAGAAAA
CAATTAAATTCATTTTAGAAAATTACGTAAACGGTTTTCGTCACCTTCTAGTTATTGTCGGAAAAGGAAGAACCGGTGAC
GCAGTTATCAAGACAAGTTTTGTATCATGGCTAGAAAACAACGCCGAAATACAAGGTCTGATCAAATTCGTATCAGAGGC
ACTGCCGCATCACGGAGGCGAAGGGGCATATTACGTCCTTCTAAGAAGGAAAAAGCCATCCGACGAATAG

Upstream 100 bases:

>100_bases
TTCATTCGATAGGCATAACACACACATAATAGAACATTCCTTTCTTTGTGATGTCCCACTCGAAGGAGACTCTCTGACAA
ACTTAAGGGATTTTACCCAT

Downstream 100 bases:

>100_bases
AAGCACAAGACAAAACTATAAGAGCTGGGATGGCAGGATTCGAACCTGCGCATCACGATACCAAAAACCGTTGCCTTACC
GCTTGGCTACATCCCAAGGA

Product: Smr domain-containing protein

Products: NA

Alternate protein names: Smr Domain Protein; Smr/MutS Family Protein; Smr Protein/Muts2-Like; Smr Protein/MutS2 C-Terminal; DNA Repair Protein Smr/MutS Family; Smr Domain Family Protein

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MELQGKAYVLPKQSQSSVCIFADSASTGILKCNALVTNKPQLFLVIKTTNSVPLLLSDHINRVIGIANVDLNRSDELVQN
TVLRMLESGAEMRYINAVLGPYMHDKYNNTKNGLPSSDTSTSFVQYPSWKCTINLHDHSIKLLEKVGVRSIRGINMYTHS
HGKESTRDNPDVSKEDSKTCNISMISISTTENSHMSMQCESTTDWDSFIQDITKVSDRFAYPCHNLRKPARDITQNIEGK
VEIYNKSSSLNTNNLDFAKSADPDFLRKIKRGKINIDKTLDLHGETMESAYQKTIKFILENYVNGFRHLLVIVGKGRTGD
AVIKTSFVSWLENNAEIQGLIKFVSEALPHHGGEGAYYVLLRRKKPSDE

Sequences:

>Translated_369_residues
MELQGKAYVLPKQSQSSVCIFADSASTGILKCNALVTNKPQLFLVIKTTNSVPLLLSDHINRVIGIANVDLNRSDELVQN
TVLRMLESGAEMRYINAVLGPYMHDKYNNTKNGLPSSDTSTSFVQYPSWKCTINLHDHSIKLLEKVGVRSIRGINMYTHS
HGKESTRDNPDVSKEDSKTCNISMISISTTENSHMSMQCESTTDWDSFIQDITKVSDRFAYPCHNLRKPARDITQNIEGK
VEIYNKSSSLNTNNLDFAKSADPDFLRKIKRGKINIDKTLDLHGETMESAYQKTIKFILENYVNGFRHLLVIVGKGRTGD
AVIKTSFVSWLENNAEIQGLIKFVSEALPHHGGEGAYYVLLRRKKPSDE
>Mature_369_residues
MELQGKAYVLPKQSQSSVCIFADSASTGILKCNALVTNKPQLFLVIKTTNSVPLLLSDHINRVIGIANVDLNRSDELVQN
TVLRMLESGAEMRYINAVLGPYMHDKYNNTKNGLPSSDTSTSFVQYPSWKCTINLHDHSIKLLEKVGVRSIRGINMYTHS
HGKESTRDNPDVSKEDSKTCNISMISISTTENSHMSMQCESTTDWDSFIQDITKVSDRFAYPCHNLRKPARDITQNIEGK
VEIYNKSSSLNTNNLDFAKSADPDFLRKIKRGKINIDKTLDLHGETMESAYQKTIKFILENYVNGFRHLLVIVGKGRTGD
AVIKTSFVSWLENNAEIQGLIKFVSEALPHHGGEGAYYVLLRRKKPSDE

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787602, Length=168, Percent_Identity=27.3809523809524, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41453; Mature: 41453

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELQGKAYVLPKQSQSSVCIFADSASTGILKCNALVTNKPQLFLVIKTTNSVPLLLSDHI
CCCCCCEEEECCCCCCCEEEEECCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHH
NRVIGIANVDLNRSDELVQNTVLRMLESGAEMRYINAVLGPYMHDKYNNTKNGLPSSDTS
HHEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCCC
TSFVQYPSWKCTINLHDHSIKLLEKVGVRSIRGINMYTHSHGKESTRDNPDVSKEDSKTC
CCEEECCCEEEEEEECCHHHHHHHHHCHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEE
NISMISISTTENSHMSMQCESTTDWDSFIQDITKVSDRFAYPCHNLRKPARDITQNIEGK
EEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCCCCE
VEIYNKSSSLNTNNLDFAKSADPDFLRKIKRGKINIDKTLDLHGETMESAYQKTIKFILE
EEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHH
NYVNGFRHLLVIVGKGRTGDAVIKTSFVSWLENNAEIQGLIKFVSEALPHHGGEGAYYVL
HHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEE
LRRKKPSDE
EECCCCCCC
>Mature Secondary Structure
MELQGKAYVLPKQSQSSVCIFADSASTGILKCNALVTNKPQLFLVIKTTNSVPLLLSDHI
CCCCCCEEEECCCCCCCEEEEECCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHH
NRVIGIANVDLNRSDELVQNTVLRMLESGAEMRYINAVLGPYMHDKYNNTKNGLPSSDTS
HHEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCCC
TSFVQYPSWKCTINLHDHSIKLLEKVGVRSIRGINMYTHSHGKESTRDNPDVSKEDSKTC
CCEEECCCEEEEEEECCHHHHHHHHHCHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEE
NISMISISTTENSHMSMQCESTTDWDSFIQDITKVSDRFAYPCHNLRKPARDITQNIEGK
EEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCCCCE
VEIYNKSSSLNTNNLDFAKSADPDFLRKIKRGKINIDKTLDLHGETMESAYQKTIKFILE
EEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHH
NYVNGFRHLLVIVGKGRTGDAVIKTSFVSWLENNAEIQGLIKFVSEALPHHGGEGAYYVL
HHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEE
LRRKKPSDE
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA