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The map label for this gene is secF [H]

Identifier: 88607514

GI number: 88607514

Start: 1393430

End: 1394347

Strand: Reverse

Name: secF [H]

Synonym: APH_1326

Alternate gene names: 88607514

Gene position: 1394347-1393430 (Counterclockwise)

Preceding gene: 88607863

Following gene: 88607368

Centisome position: 94.77

GC content: 43.9

Gene sequence:

>918_bases
GTGATTCTGCGCATTATTCCAGATGGAGTTAACTTTAATTTTGTTAAATGGGGCAAAGTTGCTCTTATTATGAGTGTATT
GCTCACGTTGGGGTCGCTTGTATTGATTTATGTCAGGGGCATAAATCTGGGCACTGACTTTGCTGGAGGTGTAGTAGTAG
ATTTTCAGGTAGCGGATACCTCAGTGGATGCTGAGCGCATAAAGTGTGTGCTTGCAGGGGCTGGATTAGGAAGCGTTTCA
GTGCAAAATTTTGGGGAAGATCCCCAGGAATTTATGGTAGTCTTCAAAGGAGGGGCCTCTTCCGGAAGCCATGTCGCTGT
AGACAAGGTAAAAGGTGCACTAGGAGAGCTTGGTGAGATTAGCTACAAAAAGGTAGATTACGTAGGTGCTCAGATTGGGT
TAGCTCAGGTAAAAGAGGGAATCATAGCCGTGTTGGGTTCTTTGCTCTGCATGTTTTTCTACCTGTGCTTAAGGTTTAGA
TGGCAGTTTGCAGTGGGGGGAGTTTCAGCTTTGGTGCATGATGTCATTATTACCATGGGTATGGTAAGTGCTACTGGTCT
GGAATTTAGTCTGCCTGTTATGGCTGCTATTTTAATGGTTATAGGATATTCAGTTAACGACTCTGTGGTCATATACGACA
GAGTACGGGAACTCATGGTGCGATCTGAAACTAAAGATATGGTGCAGATTGTCAATACAGGAATTAACACGACTTTATCT
CGTACTCTTTTGACCTCTGGTACTACAATGCTCGCGGCTCTGCCGCTGATGTTATTATGTGAGGGTGCAGTACAGGATTT
GGGCATCATTGCGTTTTTTGGGGTCGTAGTAGGAACATATTCTTCCATATTCGTGTCCACAATTCCGTTTATAGGAAGTA
TACAAAAAGCGCTAAAGTTGAGTAATCCCGCCTCTTAG

Upstream 100 bases:

>100_bases
CACTATTATATAAGAACGTACTGAGATTTAGGGTATTATTATTTCTTGAACAGGTATACAAAACATCATAGACTCGCGAA
CAAGTTTCATATGGTCACTC

Downstream 100 bases:

>100_bases
ATAAGTGTATATTCACCCGTAATTGCGGTTTTGTCCCGGCGTTTTTCCTCATGGGTGGTGTTATTTTATTGCTATGCACA
TTGTGTTCTAGTATTCTTCA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MILRIIPDGVNFNFVKWGKVALIMSVLLTLGSLVLIYVRGINLGTDFAGGVVVDFQVADTSVDAERIKCVLAGAGLGSVS
VQNFGEDPQEFMVVFKGGASSGSHVAVDKVKGALGELGEISYKKVDYVGAQIGLAQVKEGIIAVLGSLLCMFFYLCLRFR
WQFAVGGVSALVHDVIITMGMVSATGLEFSLPVMAAILMVIGYSVNDSVVIYDRVRELMVRSETKDMVQIVNTGINTTLS
RTLLTSGTTMLAALPLMLLCEGAVQDLGIIAFFGVVVGTYSSIFVSTIPFIGSIQKALKLSNPAS

Sequences:

>Translated_305_residues
MILRIIPDGVNFNFVKWGKVALIMSVLLTLGSLVLIYVRGINLGTDFAGGVVVDFQVADTSVDAERIKCVLAGAGLGSVS
VQNFGEDPQEFMVVFKGGASSGSHVAVDKVKGALGELGEISYKKVDYVGAQIGLAQVKEGIIAVLGSLLCMFFYLCLRFR
WQFAVGGVSALVHDVIITMGMVSATGLEFSLPVMAAILMVIGYSVNDSVVIYDRVRELMVRSETKDMVQIVNTGINTTLS
RTLLTSGTTMLAALPLMLLCEGAVQDLGIIAFFGVVVGTYSSIFVSTIPFIGSIQKALKLSNPAS
>Mature_305_residues
MILRIIPDGVNFNFVKWGKVALIMSVLLTLGSLVLIYVRGINLGTDFAGGVVVDFQVADTSVDAERIKCVLAGAGLGSVS
VQNFGEDPQEFMVVFKGGASSGSHVAVDKVKGALGELGEISYKKVDYVGAQIGLAQVKEGIIAVLGSLLCMFFYLCLRFR
WQFAVGGVSALVHDVIITMGMVSATGLEFSLPVMAAILMVIGYSVNDSVVIYDRVRELMVRSETKDMVQIVNTGINTTLS
RTLLTSGTTMLAALPLMLLCEGAVQDLGIIAFFGVVVGTYSSIFVSTIPFIGSIQKALKLSNPAS

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=278, Percent_Identity=33.0935251798561, Blast_Score=159, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 32380; Mature: 32380

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILRIIPDGVNFNFVKWGKVALIMSVLLTLGSLVLIYVRGINLGTDFAGGVVVDFQVADT
CEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCC
SVDAERIKCVLAGAGLGSVSVQNFGEDPQEFMVVFKGGASSGSHVAVDKVKGALGELGEI
CCCHHHEEEEEEECCCCCCCHHHCCCCHHHEEEEEECCCCCCCEEEHHHHHHHHHHHCCC
SYKKVDYVGAQIGLAQVKEGIIAVLGSLLCMFFYLCLRFRWQFAVGGVSALVHDVIITMG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MVSATGLEFSLPVMAAILMVIGYSVNDSVVIYDRVRELMVRSETKDMVQIVNTGINTTLS
HHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RTLLTSGTTMLAALPLMLLCEGAVQDLGIIAFFGVVVGTYSSIFVSTIPFIGSIQKALKL
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SNPAS
CCCCC
>Mature Secondary Structure
MILRIIPDGVNFNFVKWGKVALIMSVLLTLGSLVLIYVRGINLGTDFAGGVVVDFQVADT
CEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCC
SVDAERIKCVLAGAGLGSVSVQNFGEDPQEFMVVFKGGASSGSHVAVDKVKGALGELGEI
CCCHHHEEEEEEECCCCCCCHHHCCCCHHHEEEEEECCCCCCCEEEHHHHHHHHHHHCCC
SYKKVDYVGAQIGLAQVKEGIIAVLGSLLCMFFYLCLRFRWQFAVGGVSALVHDVIITMG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MVSATGLEFSLPVMAAILMVIGYSVNDSVVIYDRVRELMVRSETKDMVQIVNTGINTTLS
HHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RTLLTSGTTMLAALPLMLLCEGAVQDLGIIAFFGVVVGTYSSIFVSTIPFIGSIQKALKL
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SNPAS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA