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The map label for this gene is ybeY [C]

Identifier: 88606960

GI number: 88606960

Start: 1358378

End: 1358842

Strand: Reverse

Name: ybeY [C]

Synonym: APH_1290

Alternate gene names: 88606960

Gene position: 1358842-1358378 (Counterclockwise)

Preceding gene: 88607201

Following gene: 88607354

Centisome position: 92.36

GC content: 37.85

Gene sequence:

>465_bases
ATGCCTGTAGAAGTAAGCACTATTGATAGGAAATGGTATCGTATTATAAGGAAGCCCAAGGCTACGTCACAAGAAATAGT
GTTGTTTGCTTTGCGCGAGCTTAAGGTAGATAGGTACAATCCCATTGTTTCTGTTGTTCTTGCGCATGATGCTCTTCTAT
TGGAGTTAAATCACAAATATAGAAACATAAACAAACCTACGAACGTTTTATCCTTCAACTATGAGGCTCTTTCGCACAAT
TGTTGTTTAGGTGAAATATTTTTATCCATAGATAGGCTTACGTACGAGTCAAAAACCTTGGGAGTAGAGGTCCACGCTCA
TTTCACTCACATGTTAATACATGGAGTGTTGCATATATTGGGTTACGATCATGAAGTTCCCGAAGATGCCCAAGAAATGC
AAGCTCTTGAAATTGATTTGTTGAGTAAGCGATCTATAGAAAACCCGTATTTAATACAGGAATAA

Upstream 100 bases:

>100_bases
AAGCAGTATGGCGATACTAAAACAACCTAGACTTTCCGTCTCCGAAGTTACTCCAGCTGAGTGGGATACGATAATAGAGA
TGTCAAATCAATAATTCAAC

Downstream 100 bases:

>100_bases
CTATCAAGCAATCTGACAAAATACTCTGGCATTATTGCATGAGCATTTATGATGCACAGGGTAGGGTATCGAGAAATACT
AGTTTATTGCAAGTAGAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MPVEVSTIDRKWYRIIRKPKATSQEIVLFALRELKVDRYNPIVSVVLAHDALLLELNHKYRNINKPTNVLSFNYEALSHN
CCLGEIFLSIDRLTYESKTLGVEVHAHFTHMLIHGVLHILGYDHEVPEDAQEMQALEIDLLSKRSIENPYLIQE

Sequences:

>Translated_154_residues
MPVEVSTIDRKWYRIIRKPKATSQEIVLFALRELKVDRYNPIVSVVLAHDALLLELNHKYRNINKPTNVLSFNYEALSHN
CCLGEIFLSIDRLTYESKTLGVEVHAHFTHMLIHGVLHILGYDHEVPEDAQEMQALEIDLLSKRSIENPYLIQE
>Mature_153_residues
PVEVSTIDRKWYRIIRKPKATSQEIVLFALRELKVDRYNPIVSVVLAHDALLLELNHKYRNINKPTNVLSFNYEALSHNC
CLGEIFLSIDRLTYESKTLGVEVHAHFTHMLIHGVLHILGYDHEVPEDAQEMQALEIDLLSKRSIENPYLIQE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=101, Percent_Identity=38.6138613861386, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_ANAPZ (Q2GIJ7)

Other databases:

- EMBL:   CP000235
- RefSeq:   YP_505804.1
- ProteinModelPortal:   Q2GIJ7
- SMR:   Q2GIJ7
- STRING:   Q2GIJ7
- GeneID:   3930300
- GenomeReviews:   CP000235_GR
- KEGG:   aph:APH_1290
- NMPDR:   fig|212042.5.peg.1238
- TIGR:   APH_1290
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   LEAHATH
- ProtClustDB:   CLSK749536
- BioCyc:   APHA212042:APH_1290-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17890; Mature: 17759

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVEVSTIDRKWYRIIRKPKATSQEIVLFALRELKVDRYNPIVSVVLAHDALLLELNHKY
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEEECCHH
RNINKPTNVLSFNYEALSHNCCLGEIFLSIDRLTYESKTLGVEVHAHFTHMLIHGVLHIL
CCCCCCCCEEEECHHHHCCCCHHHHHHHHHHHHEECCCEEEEEEHHHHHHHHHHHHHHHH
GYDHEVPEDAQEMQALEIDLLSKRSIENPYLIQE
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECC
>Mature Secondary Structure 
PVEVSTIDRKWYRIIRKPKATSQEIVLFALRELKVDRYNPIVSVVLAHDALLLELNHKY
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEEECCHH
RNINKPTNVLSFNYEALSHNCCLGEIFLSIDRLTYESKTLGVEVHAHFTHMLIHGVLHIL
CCCCCCCCEEEECHHHHCCCCHHHHHHHHHHHHEECCCEEEEEEHHHHHHHHHHHHHHHH
GYDHEVPEDAQEMQALEIDLLSKRSIENPYLIQE
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA