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The map label for this gene is ycfH [C]

Identifier: 88606848

GI number: 88606848

Start: 548560

End: 548799

Strand: Direct

Name: ycfH [C]

Synonym: APH_0530

Alternate gene names: 88606848

Gene position: 548560-548799 (Clockwise)

Preceding gene: 88607572

Following gene: 88607139

Centisome position: 37.28

GC content: 39.17

Gene sequence:

>240_bases
TTGCCAATAAAGAAGATCGATGGCGTCGAAACCGATTCACCATATTTATGTCCAGAGCCCCACAGAGAGAAACAAAACTC
TCCAGAAATGACCAGATTTGTCGTAGAAAGTTTGGCTCAGATATGGGAAGAAAGCGTTGACGTAGTAAGCGAAATAACTA
CGAAGAATTTTTTCACACTTTTTGATAAATGTGCTCGTCTATACTATGCATCAGAAGAATCCAATAATTTGCGCTCTTGA

Upstream 100 bases:

>100_bases
GCGCTTCTATGCCAGCTCCTAGCGCTTTTGCTATTCTTTCTATTAGTAGTAAATTCAGCTTTCACATCTTCAAAGGTGTT
TCTACTGCTAAATTTCATGA

Downstream 100 bases:

>100_bases
TACAGCAGATCTAGAACGTGCAACTACCTTAGCAAAGGCAATATCTGGTAAGGTTGCTATACAGTTACATTTCCGTGCTT
CATCAGTAAGACGCGTCAAC

Product: TatD family hydrolase truncation

Products: NA

Alternate protein names: Mg-Dependent DNAse TadD; Deoxyribonuclease TatD Family; TatD Family Hydrolase Truncation; TatD Family Deoxyribonuclease; TatD-Related Deoxyribonuclease

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MPIKKIDGVETDSPYLCPEPHREKQNSPEMTRFVVESLAQIWEESVDVVSEITTKNFFTLFDKCARLYYASEESNNLRS

Sequences:

>Translated_79_residues
MPIKKIDGVETDSPYLCPEPHREKQNSPEMTRFVVESLAQIWEESVDVVSEITTKNFFTLFDKCARLYYASEESNNLRS
>Mature_78_residues
PIKKIDGVETDSPYLCPEPHREKQNSPEMTRFVVESLAQIWEESVDVVSEITTKNFFTLFDKCARLYYASEESNNLRS

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.21.-

Molecular weight: Translated: 9189; Mature: 9058

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIKKIDGVETDSPYLCPEPHREKQNSPEMTRFVVESLAQIWEESVDVVSEITTKNFFTL
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDKCARLYYASEESNNLRS
HHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PIKKIDGVETDSPYLCPEPHREKQNSPEMTRFVVESLAQIWEESVDVVSEITTKNFFTL
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDKCARLYYASEESNNLRS
HHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA