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The map label for this gene is lytR [H]

Identifier: 88196226

GI number: 88196226

Start: 2375348

End: 2376271

Strand: Reverse

Name: lytR [H]

Synonym: SAOUHSC_02583

Alternate gene names: 88196226

Gene position: 2376271-2375348 (Counterclockwise)

Preceding gene: 88196227

Following gene: 88196225

Centisome position: 84.22

GC content: 35.39

Gene sequence:

>924_bases
ATGAGCCTACCGAAAAAAATATTTTTATGGGTATTCGGTATTTTAGTAATCTTAGCGATTGTAGCTGTTGTGTATGTAGC
TGCTAAAATTTTTATTACTGGTAATAAGATACACAATCCGTTAGATCGCAATCATTCAGAATTAAGAGATAAAAAAGTGA
GTTTAAACGATGGTGATCCATTCACAATCGCTTTATTTGGTGTCGATTCAGATGCTGATCGTAAGAAAAAGGGTGGCGGA
GAGCGTAGTGATAGTATTATGATTTTATCTATCAACCCTAAAACGAAGAAAACTGAAATAGTAAGTATACCGCGTGATAC
AAGAGCGGAAATTGTTGGCCGTGGTACTACTGAAAAAATTGCACATGCCTATGCATATGGTGGACCAAATATGGCTGTTA
AATCACTTGAAAAATTAATGAATGTGCCAATTGATCATTATGCGACAATCGATATGGATGGTTTGCATAATATGATAGAT
AGCATCGGCGGTGTTGATGTAGTAAGTAATGATACATTCACTGTTGATGGTGTTCGTTTTACAAAAGGACAGCAGACACA
TGTAAATGGTGATCAAGCATTGAAGTTTATTAGAAGTCGTAAAGAAGAAGGTGCTGGTGGTGACTTTGGTCGACAACAAC
GTCAGCAAATTGTGCTTGAAGCGATGGCCAATAAGATTGCAAGCCCATCATCGATTACACATTTTAATAGTCTAATGAAT
GAAATTCAAAATAATGTTAAAACAGATTTAACATTAGGTGATTTGAATACGATTAGAAGCAATTATAAAGATGCTAATGA
CACGATTAATAAACATCAATTGAGTGGTCAAGGCGGCATTCAAAGTGACGGATTGTACTACTTCATTCCTAGTGAGCAGT
CAAAAGCTGAAAGTACTAAGTTATTAAAAGATAATCTAGAGTAG

Upstream 100 bases:

>100_bases
TAAAAAAATTATTTTACTATATAATAAATAGAGAAAACAGACAAAGTATGTAAGGAATAGTAAAGGAGTGGTGGGATTGA
AACGTTCGTCTAAAAGTAAA

Downstream 100 bases:

>100_bases
TAAACTAAGGGAAAATAAGTTATCAAAATTGTACACAAATTAATTAGATAGAATGATCTGTAAATAGAATAACGAATAGA
ACTAATAGCCCGTAAATAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKKVSLNDGDPFTIALFGVDSDADRKKKGGG
ERSDSIMILSINPKTKKTEIVSIPRDTRAEIVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMID
SIGGVDVVSNDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASPSSITHFNSLMN
EIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSEQSKAESTKLLKDNLE

Sequences:

>Translated_307_residues
MSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKKVSLNDGDPFTIALFGVDSDADRKKKGGG
ERSDSIMILSINPKTKKTEIVSIPRDTRAEIVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMID
SIGGVDVVSNDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASPSSITHFNSLMN
EIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSEQSKAESTKLLKDNLE
>Mature_306_residues
SLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKKVSLNDGDPFTIALFGVDSDADRKKKGGGE
RSDSIMILSINPKTKKTEIVSIPRDTRAEIVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDS
IGGVDVVSNDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASPSSITHFNSLMNE
IQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSEQSKAESTKLLKDNLE

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 33805; Mature: 33674

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKKVSLNDGDP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHCCCCCCCHHHHHHCCCCCCCCCC
FTIALFGVDSDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAEIVGRGTTEKI
EEEEEEECCCCCHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCCCCHHHHHCCCCHHHH
AHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDSIGGVDVVSNDTFTVDGVRF
HHHHHCCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCEEECCCEEEECCEEE
TKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASPSSITHFNSLMN
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
EIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSEQSKAESTK
HHHHHHHCCEEECHHHHHHHHCCCCHHCCHHHCCCCCCCCCCCCEEEEECCCCCHHHHHH
LLKDNLE
HHHHCCC
>Mature Secondary Structure 
SLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKKVSLNDGDP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHCCCCCCCHHHHHHCCCCCCCCCC
FTIALFGVDSDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAEIVGRGTTEKI
EEEEEEECCCCCHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCCCCHHHHHCCCCHHHH
AHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDSIGGVDVVSNDTFTVDGVRF
HHHHHCCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCEEECCCEEEECCEEE
TKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASPSSITHFNSLMN
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
EIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSEQSKAESTK
HHHHHHHCCEEECHHHHHHHHCCCCHHCCHHHCCCCCCCCCCCCEEEEECCCCCHHHHHH
LLKDNLE
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA