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The map label for this gene is rsbU [H]

Identifier: 88195967

GI number: 88195967

Start: 2133600

End: 2134388

Strand: Reverse

Name: rsbU [H]

Synonym: SAOUHSC_02301

Alternate gene names: 88195967

Gene position: 2134388-2133600 (Counterclockwise)

Preceding gene: 88195968

Following gene: 88195966

Centisome position: 75.65

GC content: 30.54

Gene sequence:

>789_bases
ATGTCTTACAAGAAATTTGGTTATAGTTATCGAGATTATCAAAGATTGGTAGATAAACTTCAAGTTCACGATAAAGAGAT
AGACTTAGCTTCTAGCTTACAACAAACAATGCTTAAAACAGATATTCCACAATTTGATAGTATTCAAATTGGCGTTATTT
CAGTGGCGGCACAAAAAGTAAGTGGAGATTATTTTAATTTAATTGACCATAACGATGGCACAATGAGCTTTGCTGTTGCA
GATGTCATTGGAAAAGGTATACCAGCTGCTTTAGCAATGAGTATGATAAAGTTTGGCATGGATTCTTATGGACACTCACA
ATTACCGAGTGATGGTTTAAAACGTTTAAATCGTGTTGTTGAAAAGAATATTAATCAAAATATGTTCGTCACAATGTTTT
ATGGTTTATATGAAGAAATGAACCATTTATTGTATTGTAGTTCAGCTGGTCATGAGCCTGGATATATTTATCGCGCTGAA
AAAGAAGAATTTGAAGAAATTTCAGTTAGAGGTAGAGTGTTAGGAATCAGTTCACAAACACGATATCAACAACAAGAAAT
TCCAATATACCTTGATGATTTAATTATCATTTTAACGGATGGTGTGACTGAAGCTAGAAATAGTGAAGGTACCTTTATAG
ATAAACAAAAACTTTTAGAATATATTAAAAAACATAAACATATGCACCCACAAGATATTGTTCAAATTATCTATGAAGCA
ATTTTAAAGCTTCAAAACCCAAATAAAAAAGATGATATGACTATTTTGATTATAAAAAGAGTAAATTAA

Upstream 100 bases:

>100_bases
GTGATTCGTAAGGACGTCTTGCCTGAAGACATTGTCGATATTCACAAAAACTATATATTGACGTTAAACTTAACGCGTGA
AGATGTGTTCAAGACATTAG

Downstream 100 bases:

>100_bases
TTTAAAAAAGAAGATTAGAAATTATTTCGATGGGTATATAATAATTTGAAATATAAATATGGTGGATACAGCGCTTAAAA
TGAAGATAAATATTTTTAAT

Product: sigmaB regulation protein RsbU

Products: NA

Alternate protein names: Sigma factor sigB regulation protein rsbU [H]

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSYKKFGYSYRDYQRLVDKLQVHDKEIDLASSLQQTMLKTDIPQFDSIQIGVISVAAQKVSGDYFNLIDHNDGTMSFAVA
DVIGKGIPAALAMSMIKFGMDSYGHSQLPSDGLKRLNRVVEKNINQNMFVTMFYGLYEEMNHLLYCSSAGHEPGYIYRAE
KEEFEEISVRGRVLGISSQTRYQQQEIPIYLDDLIIILTDGVTEARNSEGTFIDKQKLLEYIKKHKHMHPQDIVQIIYEA
ILKLQNPNKKDDMTILIIKRVN

Sequences:

>Translated_262_residues
MSYKKFGYSYRDYQRLVDKLQVHDKEIDLASSLQQTMLKTDIPQFDSIQIGVISVAAQKVSGDYFNLIDHNDGTMSFAVA
DVIGKGIPAALAMSMIKFGMDSYGHSQLPSDGLKRLNRVVEKNINQNMFVTMFYGLYEEMNHLLYCSSAGHEPGYIYRAE
KEEFEEISVRGRVLGISSQTRYQQQEIPIYLDDLIIILTDGVTEARNSEGTFIDKQKLLEYIKKHKHMHPQDIVQIIYEA
ILKLQNPNKKDDMTILIIKRVN
>Mature_261_residues
SYKKFGYSYRDYQRLVDKLQVHDKEIDLASSLQQTMLKTDIPQFDSIQIGVISVAAQKVSGDYFNLIDHNDGTMSFAVAD
VIGKGIPAALAMSMIKFGMDSYGHSQLPSDGLKRLNRVVEKNINQNMFVTMFYGLYEEMNHLLYCSSAGHEPGYIYRAEK
EEFEEISVRGRVLGISSQTRYQQQEIPIYLDDLIIILTDGVTEARNSEGTFIDKQKLLEYIKKHKHMHPQDIVQIIYEAI
LKLQNPNKKDDMTILIIKRVN

Specific function: Positive regulator of sigma-B activity. Dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module [H]

COG id: COG2208

COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PP2C-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017944
- InterPro:   IPR001932
- InterPro:   IPR014787
- InterPro:   IPR010822
- ProDom:   PD685490 [H]

Pfam domain/function: PF08673 RsbU_N; PF07228 SpoIIE [H]

EC number: =3.1.3.3 [H]

Molecular weight: Translated: 30071; Mature: 29940

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYKKFGYSYRDYQRLVDKLQVHDKEIDLASSLQQTMLKTDIPQFDSIQIGVISVAAQKV
CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHH
SGDYFNLIDHNDGTMSFAVADVIGKGIPAALAMSMIKFGMDSYGHSQLPSDGLKRLNRVV
CCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
EKNINQNMFVTMFYGLYEEMNHLLYCSSAGHEPGYIYRAEKEEFEEISVRGRVLGISSQT
HHCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCEEEECCHHHHHHHHHCCEEEECCCHH
RYQQQEIPIYLDDLIIILTDGVTEARNSEGTFIDKQKLLEYIKKHKHMHPQDIVQIIYEA
HHHHHCCCEEECCEEEEEECCCHHCCCCCCCEECHHHHHHHHHHHCCCCHHHHHHHHHHH
ILKLQNPNKKDDMTILIIKRVN
HHHCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
SYKKFGYSYRDYQRLVDKLQVHDKEIDLASSLQQTMLKTDIPQFDSIQIGVISVAAQKV
CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHH
SGDYFNLIDHNDGTMSFAVADVIGKGIPAALAMSMIKFGMDSYGHSQLPSDGLKRLNRVV
CCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
EKNINQNMFVTMFYGLYEEMNHLLYCSSAGHEPGYIYRAEKEEFEEISVRGRVLGISSQT
HHCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCEEEECCHHHHHHHHHCCEEEECCCHH
RYQQQEIPIYLDDLIIILTDGVTEARNSEGTFIDKQKLLEYIKKHKHMHPQDIVQIIYEA
HHHHHCCCEEECCEEEEEECCCHHCCCCCCCEECHHHHHHHHHHHCCCCHHHHHHHHHHH
ILKLQNPNKKDDMTILIIKRVN
HHHCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8002610; 8002609; 9384377; 8824586; 9786195; 12499568 [H]