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The map label for this gene is radC

Identifier: 88195464

GI number: 88195464

Start: 1662732

End: 1663388

Strand: Reverse

Name: radC

Synonym: SAOUHSC_01763

Alternate gene names: 88195464

Gene position: 1663388-1662732 (Counterclockwise)

Preceding gene: 88195465

Following gene: 88195463

Centisome position: 58.96

GC content: 32.72

Gene sequence:

>657_bases
ATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATACAGAATTATTAGCTATATTAATTAACACCGG
AAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTGCTTCGAATCTGAATGAATTGAAAAAATCTT
CAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATTACTTTAAAAGCAGCATTTGAGTTAGGGGAA
AGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAGTGATGTTGCTGATTATATGATTCCAACAAT
GAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAAATGTAGTGATTAAAGAAACCTGTGTTTTTA
AAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATTGCGGTGAGAGAAAATGCCAATGCAATCATC
GCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATATCATAACAACAATGAGGTTGAAGGAGTGTGG
TTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATAGATTTACCAGTCTTGTAGAAGCGGGTTACT
TTGATGAAAATGATTGA

Upstream 100 bases:

>100_bases
TATTTATTTCCTTTTTTATCAATTCACTTTTTTATAATGATATCCATCAATTTTTAGGAGGCGTATATTTTTGAAAATTA
AAGAAATGGTAACTTCAGAA

Downstream 100 bases:

>100_bases
AGTTGATAGAATTAATGACGTATCTTGTGTATAATACCTACGAAGTACTTTCATTGGAGGAAAAATAGTGACTCTATTTA
TTATTATCGGGGTTCTCGTG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAITLKAAFELGE
RMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAII
AVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Sequences:

>Translated_218_residues
MPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAITLKAAFELGE
RMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAII
AVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND
>Mature_217_residues
PRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAITLKAAFELGER
MGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIA
VHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=217, Percent_Identity=34.5622119815668, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1788312, Length=122, Percent_Identity=38.5245901639344, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1788997, Length=142, Percent_Identity=37.3239436619718, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=37.7049180327869, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24134; Mature: 24003

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIK
CCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHE
VKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLL
ECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEE
NSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDVTPSQEDIITT
CCCCEEEEEEEEEECCCCCCCCCHHHHHEEEEECCCCEEEEEECCCCCCCCCCHHHHHHH
MRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND
HHHHHCCEEEEHHHHHHEEECCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIK
CHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHE
VKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLL
ECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEE
NSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDVTPSQEDIITT
CCCCEEEEEEEEEECCCCCCCCCHHHHHEEEEECCCCEEEEEECCCCCCCCCCHHHHHHH
MRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND
HHHHHCCEEEEHHHHHHEEECCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA