Click here to switch to the map view.

The map label for this gene is 88195286

Identifier: 88195286

GI number: 88195286

Start: 1503582

End: 1503845

Strand: Reverse

Name: 88195286

Synonym: SAOUHSC_01574

Alternate gene names: NA

Gene position: 1503845-1503582 (Counterclockwise)

Preceding gene: 88196688

Following gene: 88195285

Centisome position: 53.3

GC content: 25.38

Gene sequence:

>264_bases
ATGAAAACATTAAAAGAGTTGAGGACTGATTACGGATTGACTCAAAAAGAGTTAGGAGATTTATTTAAGGTCTCATCACG
TACAATTCAAAATATGGAAAAAGACTCTACAAACATTAAAGATAGTTTACTTTCTAAGTATATGAGTGCTTTTAATGTTA
AATATGATGATATTTTTTTAGGTAATGAATACGAAAATTTCGTATTCACGAATGATAAAAAGAAATCAATTATTTTAGCA
TTTAAAGAAAAACAAACATCTTAA

Upstream 100 bases:

>100_bases
ATTTTCATATCATAGTAAAGTTTTTTACGAAAAAAACGTATTTAATGTTGACAATACGAAAATTTCGTATTATATTAGGT
TTACGAAAGGCGGTGACAAC

Downstream 100 bases:

>100_bases
AAGGAGGAATAACAAATGAACATTCAAGAAGCAACTAAGATAGCTACAAAAAATCTTGTCTCTATGACACGGAAAGATTG
GAAAGAAAGTCATCGAACTA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNEYENFVFTNDKKKSIILA
FKEKQTS

Sequences:

>Translated_87_residues
MKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNEYENFVFTNDKKKSIILA
FKEKQTS
>Mature_87_residues
MKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNEYENFVFTNDKKKSIILA
FKEKQTS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10175; Mature: 10175

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFL
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE
GNEYENFVFTNDKKKSIILAFKEKQTS
CCCCCCCEEECCCCCEEEEEECCCCCC
>Mature Secondary Structure
MKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFL
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE
GNEYENFVFTNDKKKSIILAFKEKQTS
CCCCCCCEEECCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA