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The map label for this gene is ywqA [H]

Identifier: 88195255

GI number: 88195255

Start: 1489041

End: 1490408

Strand: Reverse

Name: ywqA [H]

Synonym: SAOUHSC_01542

Alternate gene names: 88195255

Gene position: 1490408-1489041 (Counterclockwise)

Preceding gene: 88195256

Following gene: 88195254

Centisome position: 52.83

GC content: 32.75

Gene sequence:

>1368_bases
GTGGAACATTTGGCGATTGACTTCAAACCACATAGCTATCAAAAGTATGCAATAGATAAAGTTATTGATAATGAGAAATA
CGGTTTGTTTTTAGATATGGGGCTAGGGAAAACAGTATCAACACTTACAGCATTTAGTGAATTGCAGTTGTTAGACACTA
AAAAAATGTTAGTCATAGCACCTAAACAAGTTGCTAAAGATACATGGGTTGATGAAGTTGATAAGTGGAACCATTTAAAT
CATCTGAAAGTGTCTTTAGTCTTAGGAACACCTAAAGAAAGAAATGATGCATTAAACACAGAGGCTGATATCTATGTAAC
CAATAAAGAAAATACTAAATGGTTATGCGATCAATATAAAAAAGAATGGCCATTTGATATGGTTGTAATTGATGAACTGT
CTACATTTAAAAGTCCTAAGAGTCAAAGGTTTAAATCTATTAAAAAGAAATTACCACTCATTAATAGATTTATAGGATTA
ACAGGAACACCTAGCCCAAATAGTTTACAGGATTTATGGGCTCAAGTTTATTTGATAGACAGAGGCGAAAGACTTGAGTC
TTCATTCAGTCGTTATCGAGAAAGGTACTTTAAACCAACACATCAAGTTAGCGAACATGTTTTTAACTGGGAGCTAAGAG
ACGGATCTGAAGAAAAGATATATGAACGAATAGAAGATATATGTTTAAGCATGAAAGCGAAAGATTATCTAGATATGCCT
GACAGAGTTGATACTAAACAAACAGTAGTCTTATCTGAAAAAGAAAGAAAAGTATATGCAGAATTAGAAAAAAACTATAT
TTTAGAATCGGAAGAAGAAGGAACAGTTGTAGCTCAGAATGGGGCATCATTAAGTCAAAAACTACTTCAACTATCTAACG
GTGCAGTTTATACAGATGATGAAGATGTAAGACTTATACATGATAAGAAGTTAGATAAGTTAGAGGAAATTATAGAGGAG
TCTCAAGGCCAACCAATATTATTGTTTTATAACTTCAAACATGATAAAGAAAGAATACTTCAAAGGTTTAAGGAAGCAAC
CACATTAGAGGATTCAAACTATAAAGAACGTTGGAATAGTGGAGACATTAAGCTGCTTATAGCACATCCAGCAAGTGCAG
GGCATGGATTAAACTTACAACAAGGTGGGCACATTATTGTTTGGTTTGGACTTACATGGTCATTGGAATTATACCAACAA
GCAAATGCAAGATTATATAGACAAGGACAAAATCATACGACTATTATTCATCACATTATGACCGATAACACAATAGATCA
AAGAGTATATAAAGCTTTACAAAATAAAGAACTAACGCAAGAAGAATTGATGAAAGCTATTAAAGCAAGAATAGCTAAGC
ATAAGTAA

Upstream 100 bases:

>100_bases
CCTTTACAAAAATATGTGCATAGACAATTTGAAAATAGAGATCATAAAGTATATGTGTTATGGAATAAAGAACAAGTAAA
TACTTTTATCAGAATGGTAG

Downstream 100 bases:

>100_bases
TGGAGGTATAAGATGGGAAAGGCATCATACGATATTAAGCCAGGTACATTTAAATATATTGAGTCAGAGATATATAACCT
ACAAGAGAACAAGAAAGAGA

Product: SNF2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MEHLAIDFKPHSYQKYAIDKVIDNEKYGLFLDMGLGKTVSTLTAFSELQLLDTKKMLVIAPKQVAKDTWVDEVDKWNHLN
HLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYKKEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGL
TGTPSPNSLQDLWAQVYLIDRGERLESSFSRYRERYFKPTHQVSEHVFNWELRDGSEEKIYERIEDICLSMKAKDYLDMP
DRVDTKQTVVLSEKERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDEDVRLIHDKKLDKLEEIIEE
SQGQPILLFYNFKHDKERILQRFKEATTLEDSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQ
ANARLYRQGQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK

Sequences:

>Translated_455_residues
MEHLAIDFKPHSYQKYAIDKVIDNEKYGLFLDMGLGKTVSTLTAFSELQLLDTKKMLVIAPKQVAKDTWVDEVDKWNHLN
HLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYKKEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGL
TGTPSPNSLQDLWAQVYLIDRGERLESSFSRYRERYFKPTHQVSEHVFNWELRDGSEEKIYERIEDICLSMKAKDYLDMP
DRVDTKQTVVLSEKERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDEDVRLIHDKKLDKLEEIIEE
SQGQPILLFYNFKHDKERILQRFKEATTLEDSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQ
ANARLYRQGQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK
>Mature_455_residues
MEHLAIDFKPHSYQKYAIDKVIDNEKYGLFLDMGLGKTVSTLTAFSELQLLDTKKMLVIAPKQVAKDTWVDEVDKWNHLN
HLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYKKEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGL
TGTPSPNSLQDLWAQVYLIDRGERLESSFSRYRERYFKPTHQVSEHVFNWELRDGSEEKIYERIEDICLSMKAKDYLDMP
DRVDTKQTVVLSEKERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDEDVRLIHDKKLDKLEEIIEE
SQGQPILLFYNFKHDKERILQRFKEATTLEDSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQ
ANARLYRQGQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK

Specific function: Unknown

COG id: COG0553

COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR022138
- InterPro:   IPR000330 [H]

Pfam domain/function: PF12419 DUF3670; PF00271 Helicase_C; PF00176 SNF2_N [H]

EC number: NA

Molecular weight: Translated: 53079; Mature: 53079

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHLAIDFKPHSYQKYAIDKVIDNEKYGLFLDMGLGKTVSTLTAFSELQLLDTKKMLVIA
CCCEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEC
PKQVAKDTWVDEVDKWNHLNHLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYK
CHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
KEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLID
HCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHEEEEEC
RGERLESSFSRYRERYFKPTHQVSEHVFNWELRDGSEEKIYERIEDICLSMKAKDYLDMP
CCHHHHHHHHHHHHHHCCCHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCCC
DRVDTKQTVVLSEKERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDD
CCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHCCCEEEECC
EDVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLEDSNYKERWNS
CCEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHCCC
GDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQGQNHTTIIHHIM
CCEEEEEECCCCCCCCCCCCCCCEEEEEECCEEEHHHHHHHCHHHHHCCCCCEEEEEEEC
TDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEHLAIDFKPHSYQKYAIDKVIDNEKYGLFLDMGLGKTVSTLTAFSELQLLDTKKMLVIA
CCCEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEC
PKQVAKDTWVDEVDKWNHLNHLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYK
CHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
KEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLID
HCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHEEEEEC
RGERLESSFSRYRERYFKPTHQVSEHVFNWELRDGSEEKIYERIEDICLSMKAKDYLDMP
CCHHHHHHHHHHHHHHCCCHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCCC
DRVDTKQTVVLSEKERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDD
CCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHCCCEEEECC
EDVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLEDSNYKERWNS
CCEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHCCC
GDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQGQNHTTIIHHIM
CCEEEEEECCCCCCCCCCCCCCCEEEEEECCEEEHHHHHHHCHHHHHCCCCCEEEEEEEC
TDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9353933 [H]