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The map label for this gene is rnhC [H]

Identifier: 88194841

GI number: 88194841

Start: 1055514

End: 1056452

Strand: Reverse

Name: rnhC [H]

Synonym: SAOUHSC_01095

Alternate gene names: 88194841

Gene position: 1056452-1055514 (Counterclockwise)

Preceding gene: 88194847

Following gene: 88194829

Centisome position: 37.44

GC content: 33.44

Gene sequence:

>939_bases
ATGGCGAATATCGTTTTTAAATTGTCGGATAAAGACATAACGACATTAATGTCACGCATTTCTTTTGATACTGAGAATTT
ACCTCAAGGTATGAAAGCACGTGCAAAGTATCAAAATACAACTGTAAATATTTACCAATCAGGTAAAGTCATGTTTCAAG
GTAATCATGCAGAAGCTGTGTCTGAAGAACTTCTACCGCAGCATTCTCAATTGAATACTAATAAAACTAAAAAGAAAAAT
ATGGCTAATTCTTTTCTTGAACAAACTTTAATGTATGATCAATTTAACTGTATTGGTAGTGATGAGGCTGGAAGTGGCGA
TTACTTTGGTCCGTTGACTGTGTGTGCTGCTTTCGTTACCAAAGAGCATGTCCCTATTTTAAAAACTTTGGGTGTAGATG
ATTCAAAAAAATTAACCGATACCAAAATTGTAGAACTTGCTGAGCAATTGGTTACTTTCATACCACATTCATTATTAACA
CTACACAATGAAAAATATAATATTCAGCAAGCAAAAGGCTGGACTCAAGTAAAAATGAAAGCTGCCCTTCATAATGAAGC
CATCAAAAATGTACTTGAAAAAATTGATTCGTCTCAATTAGACTATATCGTCATTGATCAGTTCGCAAAACGCGAAGTGT
ATAGCCATTACGCATTATCAGATATACCACTTCCAAAGAAAACAAAATTTGAAACAAAAGGAGAATCGAAGTCATTAGCC
ATTGCAGTGGCAAGCATAATTTCTCGATACGCATTTGTTACATATATGGATCAAATATCAAAAAATATTAATATGACGAT
TCCTAAAGGTGCCGGTGCTAAAGTCGATGTAATCGCCGCCAAAATTATAAAAAAATACGGTCTTTCACGTTTAGATACCA
TTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGA

Upstream 100 bases:

>100_bases
AATTCTTTACAACATACATAAATGTTTCTGACGTTATTATCATTTATGATATGATTATTTTTGCTAAAGACAATGAAATT
TTATGAAAGGATTTACACAA

Downstream 100 bases:

>100_bases
TTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAATGC
ATTGGAACCAAATTGGTGAA

Product: ribonuclease HIII

Products: NA

Alternate protein names: RNase HIII [H]

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAVSEELLPQHSQLNTNKTKKKN
MANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLT
LHNEKYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFKNREKAQKILKPL

Sequences:

>Translated_312_residues
MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAVSEELLPQHSQLNTNKTKKKN
MANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLT
LHNEKYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFKNREKAQKILKPL
>Mature_311_residues
ANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAVSEELLPQHSQLNTNKTKKKNM
ANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTL
HNEKYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAI
AVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFKNREKAQKILKPL

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG1039

COG function: function code L; Ribonuclease HIII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family. RnhC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001352
- InterPro:   IPR004641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 35055; Mature: 34924

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
CCCEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCEEEEECCCHHHH
SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
HHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
HCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHH
AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHC
NREKAQKILKPL
CHHHHHHHHCCC
>Mature Secondary Structure 
ANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
CCEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCEEEEECCCHHHH
SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
HHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
HCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHH
AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHC
NREKAQKILKPL
CHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA