Click here to switch to the map view.

The map label for this gene is rbsU [H]

Identifier: 88194048

GI number: 88194048

Start: 261269

End: 262150

Strand: Reverse

Name: rbsU [H]

Synonym: SAOUHSC_00241

Alternate gene names: 88194048

Gene position: 262150-261269 (Counterclockwise)

Preceding gene: 88194049

Following gene: 88194047

Centisome position: 9.29

GC content: 38.44

Gene sequence:

>882_bases
ATGAGCATTGTTGCATTACTTATCGGGTTAGGCCCCTTAATTGGCTGGGGCTTCTTCCCAACAGTCGCTTCAAAGTTTGG
TGGTAAACCTGTACATCAAATTATCGGTGCTACTGTAGGTACGTTAATCTTCGCTATTTTATTAGCCGTAGTCACATCAA
GTGGCTTCCCTACTGGAACCAATTTGCTATTCGCCTTATTATCAGGTGCAGGATGGGGATTCGGACAAATCATTACATTT
AAAGCGTTCGAATTAGTCGGCTCATCTCGTGCCATGCCAGTCACAACAGCATTCCAATTATTAGGCGCATCTTTATGGGG
TGTCTTTGCATTAGGAAATTGGCCAGGCATTGGTCATAAAATCATTGGATTTACAGCTTTAGTCGTTATTCTAATTGGAG
CGCGTATGACAGTTTGGAGTGAACGCAAAGAAGCAAGTAACGCCAAAAATTTACGTCGTGCAGTGGTACTTCTGTTAATT
GGTGAATTTGGATACTGGTTATATTCAGCTGCACCGCAAGCAACTTCTATTGATGGCCTAACTGCCTTTTTACCTCAAGC
AATGGGTATGGTAATTGTTGCAGTCATTTATGGCTTTATGAATATGAAAGCAGAGAATCCATTCCGTAATAAAATTACGT
GGTTACAAATTATTTCAGGTTTCTTCTTTGCATTTGGTGCTTTAACATATCTTATTTCAGCACAACCTAATATGAATGGT
TTAGCAACTGGATTTATTCTTTCTCAAACATCCGTTGTGCTTGCTACATTAACTGGTATTTATTTCTTAAAACAACATAA
AACGTCAAAAGAAATGGTTATTACAATCATCGGCTTAGTACTCATTTTAGTAGCCGCTTCTGTTACAGTATTTATAAAAT
AA

Upstream 100 bases:

>100_bases
CGTTTTCAGTTTTTATGAAAACGCATGCATTTTACAAATAAAAATGGTACGATGGCACTGGTAAAACGTTTTACTAAAAA
CAAATCATGAGGTGTATAAC

Downstream 100 bases:

>100_bases
GGAGTGTAGATGTCATGAAAAAATCAGCTGTTTTAAATGAACATATTTCAAAAGCAATCGCGACAATTGGTCATTTTGAT
TTATTAACGATTAATGACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSIVALLIGLGPLIGWGFFPTVASKFGGKPVHQIIGATVGTLIFAILLAVVTSSGFPTGTNLLFALLSGAGWGFGQIITF
KAFELVGSSRAMPVTTAFQLLGASLWGVFALGNWPGIGHKIIGFTALVVILIGARMTVWSERKEASNAKNLRRAVVLLLI
GEFGYWLYSAAPQATSIDGLTAFLPQAMGMVIVAVIYGFMNMKAENPFRNKITWLQIISGFFFAFGALTYLISAQPNMNG
LATGFILSQTSVVLATLTGIYFLKQHKTSKEMVITIIGLVLILVAASVTVFIK

Sequences:

>Translated_293_residues
MSIVALLIGLGPLIGWGFFPTVASKFGGKPVHQIIGATVGTLIFAILLAVVTSSGFPTGTNLLFALLSGAGWGFGQIITF
KAFELVGSSRAMPVTTAFQLLGASLWGVFALGNWPGIGHKIIGFTALVVILIGARMTVWSERKEASNAKNLRRAVVLLLI
GEFGYWLYSAAPQATSIDGLTAFLPQAMGMVIVAVIYGFMNMKAENPFRNKITWLQIISGFFFAFGALTYLISAQPNMNG
LATGFILSQTSVVLATLTGIYFLKQHKTSKEMVITIIGLVLILVAASVTVFIK
>Mature_292_residues
SIVALLIGLGPLIGWGFFPTVASKFGGKPVHQIIGATVGTLIFAILLAVVTSSGFPTGTNLLFALLSGAGWGFGQIITFK
AFELVGSSRAMPVTTAFQLLGASLWGVFALGNWPGIGHKIIGFTALVVILIGARMTVWSERKEASNAKNLRRAVVLLLIG
EFGYWLYSAAPQATSIDGLTAFLPQAMGMVIVAVIYGFMNMKAENPFRNKITWLQIISGFFFAFGALTYLISAQPNMNGL
ATGFILSQTSVVLATLTGIYFLKQHKTSKEMVITIIGLVLILVAASVTVFIK

Specific function: Could be involved in the uptake of ribose [H]

COG id: COG4975

COG function: function code G; Putative glucose uptake permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GRP transporter (TC 2.A.7.5) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010651 [H]

Pfam domain/function: PF06800 Sugar_transport [H]

EC number: NA

Molecular weight: Translated: 31244; Mature: 31113

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIVALLIGLGPLIGWGFFPTVASKFGGKPVHQIIGATVGTLIFAILLAVVTSSGFPTGT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
NLLFALLSGAGWGFGQIITFKAFELVGSSRAMPVTTAFQLLGASLWGVFALGNWPGIGHK
HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
IIGFTALVVILIGARMTVWSERKEASNAKNLRRAVVLLLIGEFGYWLYSAAPQATSIDGL
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
TAFLPQAMGMVIVAVIYGFMNMKAENPFRNKITWLQIISGFFFAFGALTYLISAQPNMNG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LATGFILSQTSVVLATLTGIYFLKQHKTSKEMVITIIGLVLILVAASVTVFIK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEC
>Mature Secondary Structure 
SIVALLIGLGPLIGWGFFPTVASKFGGKPVHQIIGATVGTLIFAILLAVVTSSGFPTGT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
NLLFALLSGAGWGFGQIITFKAFELVGSSRAMPVTTAFQLLGASLWGVFALGNWPGIGHK
HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
IIGFTALVVILIGARMTVWSERKEASNAKNLRRAVVLLLIGEFGYWLYSAAPQATSIDGL
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
TAFLPQAMGMVIVAVIYGFMNMKAENPFRNKITWLQIISGFFFAFGALTYLISAQPNMNG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LATGFILSQTSVVLATLTGIYFLKQHKTSKEMVITIIGLVLILVAASVTVFIK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA