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The map label for this gene is ydiF [H]

Identifier: 88194009

GI number: 88194009

Start: 220761

End: 222338

Strand: Reverse

Name: ydiF [H]

Synonym: SAOUHSC_00199

Alternate gene names: 88194009

Gene position: 222338-220761 (Counterclockwise)

Preceding gene: 88194011

Following gene: 88194008

Centisome position: 7.88

GC content: 36.82

Gene sequence:

>1578_bases
ATGGAGGTGACTTGCTTGAAACAAATCACATGGCACGACTTACAACATATCATTAAAGATGGTGATGTGATTGGTTTACC
AGCATTAGCTGTAGCCAACTTACCCGCCGAAGTTCTACGTGCTGTGTTAGCGCAACATGACACATATCATACGCCCAATG
ATTTAACGTTTATATTAGCGAATGATATTCATAGTTTAGGTGCCGCACCGGATTTAGATGATTTTATAGAACGTCGCATG
ATTAAACGTGTCATTATGAGTATTTTAACGGCTTCTTCCAAAACGGCACAAGCAATGAAAAATAATGACATTGAAGCTTA
TTTTTTACCACAAGGTATCATTGCAACTCATTATCGTCAGAGTAATCAATTATTACCTGGAGTTATTACTAAAATCGGAT
TAAACACAGCTGTTGATCCTAGATACGGTGGCGGTAAAGTAAATACACGAACAACGGATGATTTAGTTTCATTAGTAACC
ATCAACGATGAAACATACTTACATTACACATTCCCTAGCGTTGATGTGGCACTACTGAGAGGAACATACGCAGATCAACA
AGGTAACATTTATTTAACTCAAGAAGCGTACTTGAGCGAGTGTTATCATGTCGCATTAAACGCGAAAGCCAATCATGGGA
AAGTTATTGTACAAGTTAAAGCTTTAGTTGACGACTATCAACTAAAACCGAATGAAGTTGTTATCCCAGGAAATCTTGTC
GATTATGTATACGTCACAGAAGATGAAAAGAATCACCGCCAAGTAATTCAAAGTCATTATTTACCAGCCTTGTCTGGAGA
AGAACGAATTGATGGAATACCTGAACCCGCATTACCTTTTAATAGTCGCAAATTGATTCTCCGACGTGCTGCTCAGTTTT
TAACTTATGGCGATACAATTAGCATCGGTTATGGCATCAATAATGAACTCTCTAATTTATTGCATGAAGAATGTGTTGAA
CATGATGTGCAACCGATTTTAGATGTTGGCATTTTCGGTGGATTCGTTGGGAGTCGTGAACATTTTGGTATGAATTACAA
TGCAGATGTGCGCATGCCTCATGATCGAGCATGGGATTTTATTTATAACAATGGTGTATCAGTTGCCTATCTTAGCTTTG
CTGAGGTTGATCAATACGGCAATGTCAACGTGTCTTACTTCAATGACCGACTAAATGGATGTGGTGGCTTTATAGACATT
ACGCAATCTGTAAATAAAATTATCTTTTCAGGTACTTTTGTAGCTGGCAGTCATGTCTCATGCCATAATCAACGATTAAA
CATTGAAACTGAAGGACAAAACCAGAAATTTGTATCAGATGTGAGCCATATCGACTTTAATGCACAATATTCACAATCAC
TCGAGCAAGAAATCTATTTTGTTACTGATCGTGCAGTATTCGAACTCACCAATCAAGGCTTGAAACTAATTGAAATTGCA
CCAGGTCTTGATTTGCATAAAGATATTTTGAATCAAATGGCTTTTAAACCAATTATTGCTGATCATTTAAAATTAATTGA
TACCAGCATTTACAAAGAAAAATGGGGACAACTTAAACAATCAATTCATAAAGTATGA

Upstream 100 bases:

>100_bases
AGAATAAAAAGATATTTCTAATTGATTTTAAACGTCGTTATGTTATATTTCTTGTAAGGGTTTACACAAAGTGTAAAAAC
GCTATATTTTATCAAATGTG

Downstream 100 bases:

>100_bases
AAGTGAAGCTAAAGGGGGTATACTAATGAATTTCGATTGGATAAAAACGCGTTCAGACTTCGATGATGACAAGCCTGCCG
TTATTGATCACGCAAAACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 525

Protein sequence:

>525_residues
MEVTCLKQITWHDLQHIIKDGDVIGLPALAVANLPAEVLRAVLAQHDTYHTPNDLTFILANDIHSLGAAPDLDDFIERRM
IKRVIMSILTASSKTAQAMKNNDIEAYFLPQGIIATHYRQSNQLLPGVITKIGLNTAVDPRYGGGKVNTRTTDDLVSLVT
INDETYLHYTFPSVDVALLRGTYADQQGNIYLTQEAYLSECYHVALNAKANHGKVIVQVKALVDDYQLKPNEVVIPGNLV
DYVYVTEDEKNHRQVIQSHYLPALSGEERIDGIPEPALPFNSRKLILRRAAQFLTYGDTISIGYGINNELSNLLHEECVE
HDVQPILDVGIFGGFVGSREHFGMNYNADVRMPHDRAWDFIYNNGVSVAYLSFAEVDQYGNVNVSYFNDRLNGCGGFIDI
TQSVNKIIFSGTFVAGSHVSCHNQRLNIETEGQNQKFVSDVSHIDFNAQYSQSLEQEIYFVTDRAVFELTNQGLKLIEIA
PGLDLHKDILNQMAFKPIIADHLKLIDTSIYKEKWGQLKQSIHKV

Sequences:

>Translated_525_residues
MEVTCLKQITWHDLQHIIKDGDVIGLPALAVANLPAEVLRAVLAQHDTYHTPNDLTFILANDIHSLGAAPDLDDFIERRM
IKRVIMSILTASSKTAQAMKNNDIEAYFLPQGIIATHYRQSNQLLPGVITKIGLNTAVDPRYGGGKVNTRTTDDLVSLVT
INDETYLHYTFPSVDVALLRGTYADQQGNIYLTQEAYLSECYHVALNAKANHGKVIVQVKALVDDYQLKPNEVVIPGNLV
DYVYVTEDEKNHRQVIQSHYLPALSGEERIDGIPEPALPFNSRKLILRRAAQFLTYGDTISIGYGINNELSNLLHEECVE
HDVQPILDVGIFGGFVGSREHFGMNYNADVRMPHDRAWDFIYNNGVSVAYLSFAEVDQYGNVNVSYFNDRLNGCGGFIDI
TQSVNKIIFSGTFVAGSHVSCHNQRLNIETEGQNQKFVSDVSHIDFNAQYSQSLEQEIYFVTDRAVFELTNQGLKLIEIA
PGLDLHKDILNQMAFKPIIADHLKLIDTSIYKEKWGQLKQSIHKV
>Mature_525_residues
MEVTCLKQITWHDLQHIIKDGDVIGLPALAVANLPAEVLRAVLAQHDTYHTPNDLTFILANDIHSLGAAPDLDDFIERRM
IKRVIMSILTASSKTAQAMKNNDIEAYFLPQGIIATHYRQSNQLLPGVITKIGLNTAVDPRYGGGKVNTRTTDDLVSLVT
INDETYLHYTFPSVDVALLRGTYADQQGNIYLTQEAYLSECYHVALNAKANHGKVIVQVKALVDDYQLKPNEVVIPGNLV
DYVYVTEDEKNHRQVIQSHYLPALSGEERIDGIPEPALPFNSRKLILRRAAQFLTYGDTISIGYGINNELSNLLHEECVE
HDVQPILDVGIFGGFVGSREHFGMNYNADVRMPHDRAWDFIYNNGVSVAYLSFAEVDQYGNVNVSYFNDRLNGCGGFIDI
TQSVNKIIFSGTFVAGSHVSCHNQRLNIETEGQNQKFVSDVSHIDFNAQYSQSLEQEIYFVTDRAVFELTNQGLKLIEIA
PGLDLHKDILNQMAFKPIIADHLKLIDTSIYKEKWGQLKQSIHKV

Specific function: Unknown

COG id: COG4670

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae AtoD [H]

Homologues:

Organism=Escherichia coli, GI1787985, Length=482, Percent_Identity=35.0622406639004, Blast_Score=280, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014388
- InterPro:   IPR004165 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: NA

Molecular weight: Translated: 58877; Mature: 58877

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVTCLKQITWHDLQHIIKDGDVIGLPALAVANLPAEVLRAVLAQHDTYHTPNDLTFILA
CCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEE
NDIHSLGAAPDLDDFIERRMIKRVIMSILTASSKTAQAMKNNDIEAYFLPQGIIATHYRQ
CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCHHHHHHCC
SNQLLPGVITKIGLNTAVDPRYGGGKVNTRTTDDLVSLVTINDETYLHYTFPSVDVALLR
CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEHC
GTYADQQGNIYLTQEAYLSECYHVALNAKANHGKVIVQVKALVDDYQLKPNEVVIPGNLV
CCCCCCCCCEEEEHHHHHHHHHEEEEECCCCCCEEEEEEEEHHHCCCCCCCCEEECCCEE
DYVYVTEDEKNHRQVIQSHYLPALSGEERIDGIPEPALPFNSRKLILRRAAQFLTYGDTI
EEEEEECCCHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE
SIGYGINNELSNLLHEECVEHDVQPILDVGIFGGFVGSREHFGMNYNADVRMPHDRAWDF
EEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHCCCCCCCCEECCCCCCCHH
IYNNGVSVAYLSFAEVDQYGNVNVSYFNDRLNGCGGFIDITQSVNKIIFSGTFVAGSHVS
EECCCCEEEEEEHHHHHCCCCCEEEEECCCCCCCCCCEEHHHHHHHHEEECEEEECCCCE
CHNQRLNIETEGQNQKFVSDVSHIDFNAQYSQSLEQEIYFVTDRAVFELTNQGLKLIEIA
ECCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHEEEEEECHHHHHHHHCCCEEEEEC
PGLDLHKDILNQMAFKPIIADHLKLIDTSIYKEKWGQLKQSIHKV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEVTCLKQITWHDLQHIIKDGDVIGLPALAVANLPAEVLRAVLAQHDTYHTPNDLTFILA
CCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEE
NDIHSLGAAPDLDDFIERRMIKRVIMSILTASSKTAQAMKNNDIEAYFLPQGIIATHYRQ
CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCHHHHHHCC
SNQLLPGVITKIGLNTAVDPRYGGGKVNTRTTDDLVSLVTINDETYLHYTFPSVDVALLR
CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEHC
GTYADQQGNIYLTQEAYLSECYHVALNAKANHGKVIVQVKALVDDYQLKPNEVVIPGNLV
CCCCCCCCCEEEEHHHHHHHHHEEEEECCCCCCEEEEEEEEHHHCCCCCCCCEEECCCEE
DYVYVTEDEKNHRQVIQSHYLPALSGEERIDGIPEPALPFNSRKLILRRAAQFLTYGDTI
EEEEEECCCHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE
SIGYGINNELSNLLHEECVEHDVQPILDVGIFGGFVGSREHFGMNYNADVRMPHDRAWDF
EEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHCCCCCCCCEECCCCCCCHH
IYNNGVSVAYLSFAEVDQYGNVNVSYFNDRLNGCGGFIDITQSVNKIIFSGTFVAGSHVS
EECCCCEEEEEEHHHHHCCCCCEEEEECCCCCCCCCCEEHHHHHHHHEEECEEEECCCCE
CHNQRLNIETEGQNQKFVSDVSHIDFNAQYSQSLEQEIYFVTDRAVFELTNQGLKLIEIA
ECCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHEEEEEECHHHHHHHHCCCEEEEEC
PGLDLHKDILNQMAFKPIIADHLKLIDTSIYKEKWGQLKQSIHKV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 3541912; 7984428 [H]