| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is yegT [H]
Identifier: 87201178
GI number: 87201178
Start: 3380417
End: 3381637
Strand: Direct
Name: yegT [H]
Synonym: Saro_3166
Alternate gene names: 87201178
Gene position: 3380417-3381637 (Clockwise)
Preceding gene: 87201174
Following gene: 87201179
Centisome position: 94.91
GC content: 65.03
Gene sequence:
>1221_bases TTGTCAACGCTGTCACTCAAAATTCGCCTGTTCGCCATGATGGCACTGCAACTCGCCGTGTGGGGGGCCTGGGCGCCCAA GCTGTTTCCCTACATGGCCATGCTGGGCTTCAGCGCCGGGCAGCAAGGGCTGGTCGGAACGTGCTGGGGCATCGCCTCGG TAGTGGGGATTTTCTTCTCCAACCAGTTCGCCGATCGCACGTTTGCGGCCGAGCGATTCCTTGCCGGCAGCCACCTCATC GGCGGCCTCGCCCTCCTCGGCGTCGCCTTCAGCCAGACCTTCGCGCCGTTCTTCCTGTGTTACCTGATCTACAGCCTGGT CTACGTGCCGACACTGTCGGTGACCAATACCGTCGCCTTCACCCACCTGCCCAATCCGGCCGAATTCGGCTCGGTCCGCT CGGGCGGCACGGTAGGCTGGATCATGGCGAGCTGGCCCTTCGTCTTCCTGCTGGGCGCCCATGCCGATGCCAGCCAGGTG CGCTCGATCTTCATCGTCGCGGCGGTCATCTCGTTCGTCATGGCCGCCTTCTCGCTGACCCTGCCGCACACCCCGCCCAA GACCGGCGAGGGCATCGACAAGCTCGCCTGGCGACGCGCGCTGGGCCTGCTTCGGAAGCCGGTCGTGGCGGTGCTGTTCC TCGTGACGTTCATCGATTCGGTCGTCCACAATGGCTACTTCGTGCTGTCCGACGCCTTCCTGACGAACCGCGTGGGCATT GCCGGCAACCTATCGATGGTGGTGCTGAGCCTTGGGCAGGTAGCCGAGATCCTCACCATGCTCGTGCTCGGAACCGTGCT GGCCCGGCTCGGGTGGCGCTGGACGATGATCGTCGGCATCCTCGGACATGCCGCGCGCTTCCTCGCCTTCTCGTTCCTTG CCGACAGCGTTCCCGCGATCATCGCGGTCCAGTTGCTCCACGGCATCTGCTACGCCTTCTTCTTCGCGACGGTCTATATC TTCGTTGACGAGGCCTTTCCCAAGGACGTGCGCTCTTCGGGCCAGGGGCTGTTCAACCTGCTGATCCTGGGCCTGGGCAA CATGGTGGCCAGCTTTGCCTTCCCGGCCCTCGTCTCCCGTCTCACCGGGGCCGACGGCAAGGTCGATTACCAGGCCGTTT TCCTTGTCCCCGCAGGGCTTGCGGCCCTCGGCGCGGTGCTGCTGCTGGTCGCCTTCCGCCCCCAAACGCATGGCCCCGCG AGGCCCGAGGAGATTGCCTGA
Upstream 100 bases:
>100_bases TTATGAAACATTTGCCCGTCTCCCGAACAGTTCGCTGTTGCGTCTTTGCGCGCTTGCAGCGACTATCTTCGGCAAAAGGT ATGGGATCGAGGGGCTCAAA
Downstream 100 bases:
>100_bases TGCACGACGCAAAGCTTGATCGCCGCTCGCTGATCGCGGCGCTGGCCGCCACCGGAGTTGCCGCCATGACCGGAACCGAC GCCATCGCGCGCGCTGCCGC
Product: nucleoside:H+ symporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MSTLSLKIRLFAMMALQLAVWGAWAPKLFPYMAMLGFSAGQQGLVGTCWGIASVVGIFFSNQFADRTFAAERFLAGSHLI GGLALLGVAFSQTFAPFFLCYLIYSLVYVPTLSVTNTVAFTHLPNPAEFGSVRSGGTVGWIMASWPFVFLLGAHADASQV RSIFIVAAVISFVMAAFSLTLPHTPPKTGEGIDKLAWRRALGLLRKPVVAVLFLVTFIDSVVHNGYFVLSDAFLTNRVGI AGNLSMVVLSLGQVAEILTMLVLGTVLARLGWRWTMIVGILGHAARFLAFSFLADSVPAIIAVQLLHGICYAFFFATVYI FVDEAFPKDVRSSGQGLFNLLILGLGNMVASFAFPALVSRLTGADGKVDYQAVFLVPAGLAALGAVLLLVAFRPQTHGPA RPEEIA
Sequences:
>Translated_406_residues MSTLSLKIRLFAMMALQLAVWGAWAPKLFPYMAMLGFSAGQQGLVGTCWGIASVVGIFFSNQFADRTFAAERFLAGSHLI GGLALLGVAFSQTFAPFFLCYLIYSLVYVPTLSVTNTVAFTHLPNPAEFGSVRSGGTVGWIMASWPFVFLLGAHADASQV RSIFIVAAVISFVMAAFSLTLPHTPPKTGEGIDKLAWRRALGLLRKPVVAVLFLVTFIDSVVHNGYFVLSDAFLTNRVGI AGNLSMVVLSLGQVAEILTMLVLGTVLARLGWRWTMIVGILGHAARFLAFSFLADSVPAIIAVQLLHGICYAFFFATVYI FVDEAFPKDVRSSGQGLFNLLILGLGNMVASFAFPALVSRLTGADGKVDYQAVFLVPAGLAALGAVLLLVAFRPQTHGPA RPEEIA >Mature_405_residues STLSLKIRLFAMMALQLAVWGAWAPKLFPYMAMLGFSAGQQGLVGTCWGIASVVGIFFSNQFADRTFAAERFLAGSHLIG GLALLGVAFSQTFAPFFLCYLIYSLVYVPTLSVTNTVAFTHLPNPAEFGSVRSGGTVGWIMASWPFVFLLGAHADASQVR SIFIVAAVISFVMAAFSLTLPHTPPKTGEGIDKLAWRRALGLLRKPVVAVLFLVTFIDSVVHNGYFVLSDAFLTNRVGIA GNLSMVVLSLGQVAEILTMLVLGTVLARLGWRWTMIVGILGHAARFLAFSFLADSVPAIIAVQLLHGICYAFFFATVYIF VDEAFPKDVRSSGQGLFNLLILGLGNMVASFAFPALVSRLTGADGKVDYQAVFLVPAGLAALGAVLLLVAFRPQTHGPAR PEEIA
Specific function: Could be involved in nucleoside transport [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788415, Length=408, Percent_Identity=31.1274509803922, Blast_Score=160, Evalue=1e-40, Organism=Escherichia coli, GI1788745, Length=422, Percent_Identity=26.0663507109005, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI87082192, Length=421, Percent_Identity=26.8408551068884, Blast_Score=112, Evalue=3e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR004740 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43524; Mature: 43393
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: PS00139 THIOL_PROTEASE_CYS ; PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLSLKIRLFAMMALQLAVWGAWAPKLFPYMAMLGFSAGQQGLVGTCWGIASVVGIFFS CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH NQFADRTFAAERFLAGSHLIGGLALLGVAFSQTFAPFFLCYLIYSLVYVPTLSVTNTVAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEE THLPNPAEFGSVRSGGTVGWIMASWPFVFLLGAHADASQVRSIFIVAAVISFVMAAFSLT EECCCCHHCCCCCCCCCEEEHHHHCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC LPHTPPKTGEGIDKLAWRRALGLLRKPVVAVLFLVTFIDSVVHNGYFVLSDAFLTNRVGI CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHCCCC AGNLSMVVLSLGQVAEILTMLVLGTVLARLGWRWTMIVGILGHAARFLAFSFLADSVPAI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAVQLLHGICYAFFFATVYIFVDEAFPKDVRSSGQGLFNLLILGLGNMVASFAFPALVSR HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LTGADGKVDYQAVFLVPAGLAALGAVLLLVAFRPQTHGPARPEEIA HCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure STLSLKIRLFAMMALQLAVWGAWAPKLFPYMAMLGFSAGQQGLVGTCWGIASVVGIFFS CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH NQFADRTFAAERFLAGSHLIGGLALLGVAFSQTFAPFFLCYLIYSLVYVPTLSVTNTVAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEE THLPNPAEFGSVRSGGTVGWIMASWPFVFLLGAHADASQVRSIFIVAAVISFVMAAFSLT EECCCCHHCCCCCCCCCEEEHHHHCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC LPHTPPKTGEGIDKLAWRRALGLLRKPVVAVLFLVTFIDSVVHNGYFVLSDAFLTNRVGI CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHCCCC AGNLSMVVLSLGQVAEILTMLVLGTVLARLGWRWTMIVGILGHAARFLAFSFLADSVPAI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAVQLLHGICYAFFFATVYIFVDEAFPKDVRSSGQGLFNLLILGLGNMVASFAFPALVSR HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LTGADGKVDYQAVFLVPAGLAALGAVLLLVAFRPQTHGPARPEEIA HCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]