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The map label for this gene is ydgC [H]

Identifier: 87201158

GI number: 87201158

Start: 3355580

End: 3356191

Strand: Reverse

Name: ydgC [H]

Synonym: Saro_3146

Alternate gene names: 87201158

Gene position: 3356191-3355580 (Counterclockwise)

Preceding gene: 87201160

Following gene: 87201154

Centisome position: 94.23

GC content: 67.65

Gene sequence:

>612_bases
ATGGCGCAGGATAGCGCTGCCAGTCCCGGAAAGGTGCCCCGCACGGCACGCGGGCGCGAAACCTTGCGCAAGCTGCTCGA
TGCGGCGGCGGCGGAGTTCGGGGAGCGCGGGTTCCACGAAGCGTCGATCAGCGGGATCACTCGGCGCGCGGGAACGGCGC
TGGGCAGTTTCTACACCTACTTCGATTCCAAGGACGCGATCTTCACCGCGCTGGTGCGCGACATGTCGGCGCGGGTGGCG
ACGACGGCTGCTGCTGCGGTGAGCGAGGGCGCGACGGGCCTGCGCCGTGAGCGCGAGGCGCTTGTCGGGTTTCTGCACTT
TGCCCGCGAGCACAAGGAAATCTACCGCATCATCGACGAAGCCGAGTTCGCCGATCCCGAAAGCTATCGCGCGCACTATG
AAGGCACGGCGACCCGCATCGCCGCGCGCCTTGCCGAAGGTGTGCAGGCGGGCATCGTCCGCCATGGCGACCAGGAAGTG
CGGGCCTGGGCGATCATGGGCATGAATGTGTTTCTGGGCCTGCGCTATGGCGTGTGGGACGACAGCCGGCCGGTCGAGGA
GATCGCCGAAGTGGCGGCCGATCTGCTGGGCGAAGGGCTCAATCGCCGCTGA

Upstream 100 bases:

>100_bases
CGAATCGTGGCGAAACGGCAACAGGGGTGGGGCCGACTGGCTGCCGGATGGCGGCAGGCGAAAGAATGGCGGGGGCTGAT
GAGCGGGGGAGTATCGATCG

Downstream 100 bases:

>100_bases
GGCCCTGCCGTTCGGTCCAGCGCGCGCGGATGGCGTCGGAGCCTTCGCGGCTGCCGTCGTGGCTCCAGCCGGGCGCGCGC
ACGAGATAGTGCAGCTTGTA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAQDSAASPGKVPRTARGRETLRKLLDAAAAEFGERGFHEASISGITRRAGTALGSFYTYFDSKDAIFTALVRDMSARVA
TTAAAAVSEGATGLRREREALVGFLHFAREHKEIYRIIDEAEFADPESYRAHYEGTATRIAARLAEGVQAGIVRHGDQEV
RAWAIMGMNVFLGLRYGVWDDSRPVEEIAEVAADLLGEGLNRR

Sequences:

>Translated_203_residues
MAQDSAASPGKVPRTARGRETLRKLLDAAAAEFGERGFHEASISGITRRAGTALGSFYTYFDSKDAIFTALVRDMSARVA
TTAAAAVSEGATGLRREREALVGFLHFAREHKEIYRIIDEAEFADPESYRAHYEGTATRIAARLAEGVQAGIVRHGDQEV
RAWAIMGMNVFLGLRYGVWDDSRPVEEIAEVAADLLGEGLNRR
>Mature_202_residues
AQDSAASPGKVPRTARGRETLRKLLDAAAAEFGERGFHEASISGITRRAGTALGSFYTYFDSKDAIFTALVRDMSARVAT
TAAAAVSEGATGLRREREALVGFLHFAREHKEIYRIIDEAEFADPESYRAHYEGTATRIAARLAEGVQAGIVRHGDQEVR
AWAIMGMNVFLGLRYGVWDDSRPVEEIAEVAADLLGEGLNRR

Specific function: Repressor Involved In Choline Regulation Of The Bet Genes. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22190; Mature: 22059

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQDSAASPGKVPRTARGRETLRKLLDAAAAEFGERGFHEASISGITRRAGTALGSFYTY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
FDSKDAIFTALVRDMSARVATTAAAAVSEGATGLRREREALVGFLHFAREHKEIYRIIDE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEFADPESYRAHYEGTATRIAARLAEGVQAGIVRHGDQEVRAWAIMGMNVFLGLRYGVWD
HHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
DSRPVEEIAEVAADLLGEGLNRR
CCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AQDSAASPGKVPRTARGRETLRKLLDAAAAEFGERGFHEASISGITRRAGTALGSFYTY
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
FDSKDAIFTALVRDMSARVATTAAAAVSEGATGLRREREALVGFLHFAREHKEIYRIIDE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEFADPESYRAHYEGTATRIAARLAEGVQAGIVRHGDQEVRAWAIMGMNVFLGLRYGVWD
HHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
DSRPVEEIAEVAADLLGEGLNRR
CCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]