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The map label for this gene is cspG [C]

Identifier: 87201154

GI number: 87201154

Start: 3352715

End: 3353518

Strand: Reverse

Name: cspG [C]

Synonym: Saro_3142

Alternate gene names: 87201154

Gene position: 3353518-3352715 (Counterclockwise)

Preceding gene: 87201158

Following gene: 87201153

Centisome position: 94.16

GC content: 68.78

Gene sequence:

>804_bases
ATGGGTTTTGACAGAGGGCGGCGGGGTCGCGGTAGAGACAAGCGCGACGGATTCGGCGACGAAGGCGGTTTCGATCCCTA
CGGCGGTGGCGGCTTTGGCGGCGGCGGTTACGACCGCGGCGGTTTTGGCGGCGGTGACCGCGGTGGCTTCGGTGGCGGTG
GTCGCGGCGGCTTCGGCGGCGGTGACCGCGGTGGCTTCGGCGGCGGCGACCGCGGCGGCTTTGGCGGCGGCGATCGTGGC
GGCTTCGGCGGCGGCGGCGGTGGTCGCGGCGGCTTCGGCGGCCCGCGTGGCGGCGGCGGCGGTGGCGGCATGCCCGCCCA
GGTTGTCGGCACCGGCAAGGGTGTCGTAAAGTTCTTCAACGGCCAGAAGGGTTTCGGCTTCATCCAGCGTGAAGACGGCG
GTGAGGACGTGTTCGTCCACATCAGCGCGGTCGAGCGTGCGGGCCTTGAAGGCCTGGCGGAAGGCCAGCAGCTCGAATTC
AACCTCGTCGATCGCGGCGGGAAGATTTCGGCTGCCGATCTCCAGGTCGTTGGCGACGTGATCCCGGTTGCGGCAAAGCC
CGCTTCGCCGCAGCGCGAGCTGACCGGCGAGAAGGCCAGCGGCACGGTCAAGTTCTTCAACGCGATGAAGGGCTTCGGCT
TCATCACGCGTGACGACGGCCAGCCCGACGCTTTCGTGCACATCAGCGCGGTTGAGCGTTCCGGCCTGCGCGAGCTGAAC
GAAGGCGACAAGCTCGAGTTCGACCTCGAGGTCGATCGACGAGGCAAGTACTCGGCGGTCAACCTGGTGCCGCGTCAGGA
CTGA

Upstream 100 bases:

>100_bases
CCGCAAAGTCCGGTACTGATTCCTTCGTCGCGCCGCCGGTTTCCGCGTCCGGCCAGCGGCGCCGTGAAGGCTGGGGCGGA
TTGAAGGTCTATTGATTTCT

Downstream 100 bases:

>100_bases
CCGACCCGCACTGCCCCCCGGGACGTTTGACCGGGGGCCTGCAACAGACTAAACGCGAGCAGATGGCGGCCCTTTCGGGG
CCGCCATTTGTCGTTTGCGT

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MGFDRGRRGRGRDKRDGFGDEGGFDPYGGGGFGGGGYDRGGFGGGDRGGFGGGGRGGFGGGDRGGFGGGDRGGFGGGDRG
GFGGGGGGRGGFGGPRGGGGGGGMPAQVVGTGKGVVKFFNGQKGFGFIQREDGGEDVFVHISAVERAGLEGLAEGQQLEF
NLVDRGGKISAADLQVVGDVIPVAAKPASPQRELTGEKASGTVKFFNAMKGFGFITRDDGQPDAFVHISAVERSGLRELN
EGDKLEFDLEVDRRGKYSAVNLVPRQD

Sequences:

>Translated_267_residues
MGFDRGRRGRGRDKRDGFGDEGGFDPYGGGGFGGGGYDRGGFGGGDRGGFGGGGRGGFGGGDRGGFGGGDRGGFGGGDRG
GFGGGGGGRGGFGGPRGGGGGGGMPAQVVGTGKGVVKFFNGQKGFGFIQREDGGEDVFVHISAVERAGLEGLAEGQQLEF
NLVDRGGKISAADLQVVGDVIPVAAKPASPQRELTGEKASGTVKFFNAMKGFGFITRDDGQPDAFVHISAVERSGLRELN
EGDKLEFDLEVDRRGKYSAVNLVPRQD
>Mature_266_residues
GFDRGRRGRGRDKRDGFGDEGGFDPYGGGGFGGGGYDRGGFGGGDRGGFGGGGRGGFGGGDRGGFGGGDRGGFGGGDRGG
FGGGGGGRGGFGGPRGGGGGGGMPAQVVGTGKGVVKFFNGQKGFGFIQREDGGEDVFVHISAVERAGLEGLAEGQQLEFN
LVDRGGKISAADLQVVGDVIPVAAKPASPQRELTGEKASGTVKFFNAMKGFGFITRDDGQPDAFVHISAVERSGLRELNE
GDKLEFDLEVDRRGKYSAVNLVPRQD

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=51.4705882352941, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789979, Length=53, Percent_Identity=56.6037735849057, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=53.2258064516129, Blast_Score=65, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24663131, Length=78, Percent_Identity=39.7435897435897, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 27012; Mature: 26881

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFDRGRRGRGRDKRDGFGDEGGFDPYGGGGFGGGGYDRGGFGGGDRGGFGGGGRGGFGG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GDRGGFGGGDRGGFGGGDRGGFGGGGGGRGGFGGPRGGGGGGGMPAQVVGTGKGVVKFFN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEC
GQKGFGFIQREDGGEDVFVHISAVERAGLEGLAEGQQLEFNLVDRGGKISAADLQVVGDV
CCCCCEEEEECCCCCEEEEEEEHHHHCCCHHHCCCCEEEEEEECCCCEEEHHHHHHHHHH
IPVAAKPASPQRELTGEKASGTVKFFNAMKGFGFITRDDGQPDAFVHISAVERSGLRELN
HCCCCCCCCCHHHHCCCCCCCEEHHHHHHHCCCEEECCCCCCCEEEEEEHHHHHHHHHCC
EGDKLEFDLEVDRRGKYSAVNLVPRQD
CCCCEEEEEEECCCCCEEEEEEEECCC
>Mature Secondary Structure 
GFDRGRRGRGRDKRDGFGDEGGFDPYGGGGFGGGGYDRGGFGGGDRGGFGGGGRGGFGG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GDRGGFGGGDRGGFGGGDRGGFGGGGGGRGGFGGPRGGGGGGGMPAQVVGTGKGVVKFFN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEC
GQKGFGFIQREDGGEDVFVHISAVERAGLEGLAEGQQLEFNLVDRGGKISAADLQVVGDV
CCCCCEEEEECCCCCEEEEEEEHHHHCCCHHHCCCCEEEEEEECCCCEEEHHHHHHHHHH
IPVAAKPASPQRELTGEKASGTVKFFNAMKGFGFITRDDGQPDAFVHISAVERSGLRELN
HCCCCCCCCCHHHHCCCCCCCEEHHHHHHHCCCEEECCCCCCCEEEEEEHHHHHHHHHCC
EGDKLEFDLEVDRRGKYSAVNLVPRQD
CCCCEEEEEEECCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]