| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201141
Identifier: 87201141
GI number: 87201141
Start: 3338468
End: 3340807
Strand: Direct
Name: 87201141
Synonym: Saro_3129
Alternate gene names: NA
Gene position: 3338468-3340807 (Clockwise)
Preceding gene: 87201140
Following gene: 87201142
Centisome position: 93.74
GC content: 66.28
Gene sequence:
>2340_bases ATGAGCCATTGGCTCGCCAAGCGCCGAACGGTGCAGCAGACCGACATGATCCAGCGGTTCGACCCGCGCTTCTGGACCGT GAACTTCCCGCGACCGGCGATGGCCTCGGTCGTGACGACAGCCGCTGATGCCATGCGCGTCGACGTGGTGTTCCAGAAGG CAGACGACCTTGTCGGCCTGATCTGGGAATCTGAGGACAGGTGGGACCATCCGCTGCTCGCCTACGAAACGCGGCAGGAC TATTCACGGCTGACGTTGACCTTTCGCTGGCGCTCGTCAGGCATAGTCGCGCTCAACGCTGTCAATGGTCCGACGCTGAC AATCGAGGGCCGCGATGCGAGCGGCACGGCACGGGCCTGGTACGTCCGGCTGTGGAACTATGCAGACGGATCGCCGACCG ATGCGCTGATCAGACTGCCGTTTTCGGACCTTGCCGGTGGTTTCCTGCTGCCGTCGGAGGCGGACCCGGTCCACCCCGCT GACATCGACCGCATGTTCATCTCGCTCGTCCCGCCGGGTTACGCGCCGGGCAGCGACGCGGCCTATGCAAATGCGGTCGA GGGCTGGGCGGAACTGTCGGACATCCACTGCGAAGGGCATCGCCCGATGCTCGAGATCGGTGACGTCATGGTGCCACCGC ATGGCCTGGCGATCTGCACCGGCTATGACGATGCCTACAACCTGACGCCGGCGCGTGTCCTGCGGCAGGTGCGCGGTCTG GGGTACCGCGGGAGCATCAACCACTACATCGGGATGAGCCATTTCTTCCCGCTGGCACCTGATGGCGTGGGCGGCTTCGT CGTGGACGGGGCGTTGCCTGCAATGAACGCCGCGGCGAAGGCGTGGCAAGAGGCGTTCTTCACCGACGCCTGCGCGATGG GATATACCGTCATCGCCTCCCAGTCCTACGAGTTGCTGGCACAGCATTGCCCCGATGCCTGGCAGCAACGTGCCCAGGAT GGAACGCCCGCGAGGACGGGCTGGTCGCCGCCATCGGCGTTGCTGTCGCCGGCCAATGCCGAGGCCATGGCATGGGTACG CAAGGTCGGTGTCGAACTCGTTGCGCTGCTCAAGGCGGCGGGGTTACCTGTACGCCATCAGGTGGGCGAGCCGTGGTGGT GGGTGACGGCCGACCGCAGGATCTGCATCTACGACAACGCGGCAAAAGCGGCGCTGGACGGCGACCCGGTGGACATTCCC GATCTTGGCGCGCCGCTGACGGCGGCGCAGAAGAGCCTGCTCGATGCGGCGGGCACCATCCTTGCGCAATCTACCGCGGA TCTCGCCGAGGCGGTCCGAACCGCCGCCGGGGCCGCAGGAGCGGAGACGCTGCTGCTGGCATTCCTGCCGACGGTGCTTG ACCCCGCCACCCCCGACGCGCGGCGCGCCAACTTGCCGGTCGGCTGGGCCAGCCCCGCATTCGATGTCCTGCAATTGGAG GACTATGACTGGGTCACGACGGGCCGGCAGTCGCTGCGCGACGAAGGCAGGCGCATTGCCGAGGAACGCCTGGGCTACCC GCGCGACCGCCAGCACTACCTTTCGGGATTTGTCCTGACTGGAACGAACGCCGCAGTCGAATGGCCGAGGATCGATGCGG CAGCAAGCGAAGCCGTCGCGCTTGGCGTTGCGGAAACCTTCATCTGGGCACTGCCGCAGGTTTCCCGAGACGGCTTCGTC CGGCTTCCCGAGCCAACCGGAGACAACCCCATGCAATCCTTCGATGACGTCCTGTTCCCCCTGTCGCTCGGCCGGGATGC CTCCGTCACGCCGGAATTTTCGACGAACGTGACGATCACGGCTTCGGGTTTCGAGCGACGCAACAGCCTATGGTCGGACG CGCGACTGCAATTCGACGTGGGACCTGGCGTCCGTTCCGAAGCGGAGCTTGGTGAACTGATCGCCTTTTTCCGCGCCCGG CGCGGACAGGCCCGCGGGTTCCGCCTGCGCGATCCGTCCGACTTCAGTTCCAACGGCATGACCGGCACACCCACCCCTAC CGACCAGATCCTCGGGACCGGCGACGGGGCAACAGCGCGCTTCGCACTGGTCAAGCGTTATGGCGACAGCGAGGATGCCC AGCGGCGCCGAATCACCCGCCCGCGCGCCGAAACGCTGCGCGTGAGCATCGACAATGTGGAAACCGGCGACTTCACGCTG GCGCCGCTTGGCTACATCACGCTGGCCAGCGCCCCACCCTCCGGTGCAGTCGTGCGCGCGGGTTTCCTGTTCGACGTGCC GGTGCGCTTTGCCGAAGACCGCATCGATATTTCGGGCGCGGAGTTCGCGGCCGGAGAAGCGCCGAGCGTTCCGCTGGTCG AACTGCGAGAAGACGCGTGA
Upstream 100 bases:
>100_bases GGCTCCAACCAGCCCGAAACCCTTCGACGCTCCGGCAAGCAGGTGGCCCAAGCGGTGCGCCGCGCACTCAGCGACTTCTG ATCCAGCGAAAGGAACGGCC
Downstream 100 bases:
>100_bases CGCGGGCCTGGTTCAGCCAATCGCTCGAGACGGTGGCGATGTGGTGGCGGATCGAGCGGTGCGACGGGGTTGCGCTGGGC TTCACGAGCCATGACCGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 779; Mature: 778
Protein sequence:
>779_residues MSHWLAKRRTVQQTDMIQRFDPRFWTVNFPRPAMASVVTTAADAMRVDVVFQKADDLVGLIWESEDRWDHPLLAYETRQD YSRLTLTFRWRSSGIVALNAVNGPTLTIEGRDASGTARAWYVRLWNYADGSPTDALIRLPFSDLAGGFLLPSEADPVHPA DIDRMFISLVPPGYAPGSDAAYANAVEGWAELSDIHCEGHRPMLEIGDVMVPPHGLAICTGYDDAYNLTPARVLRQVRGL GYRGSINHYIGMSHFFPLAPDGVGGFVVDGALPAMNAAAKAWQEAFFTDACAMGYTVIASQSYELLAQHCPDAWQQRAQD GTPARTGWSPPSALLSPANAEAMAWVRKVGVELVALLKAAGLPVRHQVGEPWWWVTADRRICIYDNAAKAALDGDPVDIP DLGAPLTAAQKSLLDAAGTILAQSTADLAEAVRTAAGAAGAETLLLAFLPTVLDPATPDARRANLPVGWASPAFDVLQLE DYDWVTTGRQSLRDEGRRIAEERLGYPRDRQHYLSGFVLTGTNAAVEWPRIDAAASEAVALGVAETFIWALPQVSRDGFV RLPEPTGDNPMQSFDDVLFPLSLGRDASVTPEFSTNVTITASGFERRNSLWSDARLQFDVGPGVRSEAELGELIAFFRAR RGQARGFRLRDPSDFSSNGMTGTPTPTDQILGTGDGATARFALVKRYGDSEDAQRRRITRPRAETLRVSIDNVETGDFTL APLGYITLASAPPSGAVVRAGFLFDVPVRFAEDRIDISGAEFAAGEAPSVPLVELREDA
Sequences:
>Translated_779_residues MSHWLAKRRTVQQTDMIQRFDPRFWTVNFPRPAMASVVTTAADAMRVDVVFQKADDLVGLIWESEDRWDHPLLAYETRQD YSRLTLTFRWRSSGIVALNAVNGPTLTIEGRDASGTARAWYVRLWNYADGSPTDALIRLPFSDLAGGFLLPSEADPVHPA DIDRMFISLVPPGYAPGSDAAYANAVEGWAELSDIHCEGHRPMLEIGDVMVPPHGLAICTGYDDAYNLTPARVLRQVRGL GYRGSINHYIGMSHFFPLAPDGVGGFVVDGALPAMNAAAKAWQEAFFTDACAMGYTVIASQSYELLAQHCPDAWQQRAQD GTPARTGWSPPSALLSPANAEAMAWVRKVGVELVALLKAAGLPVRHQVGEPWWWVTADRRICIYDNAAKAALDGDPVDIP DLGAPLTAAQKSLLDAAGTILAQSTADLAEAVRTAAGAAGAETLLLAFLPTVLDPATPDARRANLPVGWASPAFDVLQLE DYDWVTTGRQSLRDEGRRIAEERLGYPRDRQHYLSGFVLTGTNAAVEWPRIDAAASEAVALGVAETFIWALPQVSRDGFV RLPEPTGDNPMQSFDDVLFPLSLGRDASVTPEFSTNVTITASGFERRNSLWSDARLQFDVGPGVRSEAELGELIAFFRAR RGQARGFRLRDPSDFSSNGMTGTPTPTDQILGTGDGATARFALVKRYGDSEDAQRRRITRPRAETLRVSIDNVETGDFTL APLGYITLASAPPSGAVVRAGFLFDVPVRFAEDRIDISGAEFAAGEAPSVPLVELREDA >Mature_778_residues SHWLAKRRTVQQTDMIQRFDPRFWTVNFPRPAMASVVTTAADAMRVDVVFQKADDLVGLIWESEDRWDHPLLAYETRQDY SRLTLTFRWRSSGIVALNAVNGPTLTIEGRDASGTARAWYVRLWNYADGSPTDALIRLPFSDLAGGFLLPSEADPVHPAD IDRMFISLVPPGYAPGSDAAYANAVEGWAELSDIHCEGHRPMLEIGDVMVPPHGLAICTGYDDAYNLTPARVLRQVRGLG YRGSINHYIGMSHFFPLAPDGVGGFVVDGALPAMNAAAKAWQEAFFTDACAMGYTVIASQSYELLAQHCPDAWQQRAQDG TPARTGWSPPSALLSPANAEAMAWVRKVGVELVALLKAAGLPVRHQVGEPWWWVTADRRICIYDNAAKAALDGDPVDIPD LGAPLTAAQKSLLDAAGTILAQSTADLAEAVRTAAGAAGAETLLLAFLPTVLDPATPDARRANLPVGWASPAFDVLQLED YDWVTTGRQSLRDEGRRIAEERLGYPRDRQHYLSGFVLTGTNAAVEWPRIDAAASEAVALGVAETFIWALPQVSRDGFVR LPEPTGDNPMQSFDDVLFPLSLGRDASVTPEFSTNVTITASGFERRNSLWSDARLQFDVGPGVRSEAELGELIAFFRARR GQARGFRLRDPSDFSSNGMTGTPTPTDQILGTGDGATARFALVKRYGDSEDAQRRRITRPRAETLRVSIDNVETGDFTLA PLGYITLASAPPSGAVVRAGFLFDVPVRFAEDRIDISGAEFAAGEAPSVPLVELREDA
Specific function: Unknown
COG id: COG5448
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84641; Mature: 84510
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS00387 PPASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHWLAKRRTVQQTDMIQRFDPRFWTVNFPRPAMASVVTTAADAMRVDVVFQKADDLVGL CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHEEEEEEEECCCCEEEE IWESEDRWDHPLLAYETRQDYSRLTLTFRWRSSGIVALNAVNGPTLTIEGRDASGTARAW EECCCCCCCCCEEEEECCCCCCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCEEE YVRLWNYADGSPTDALIRLPFSDLAGGFLLPSEADPVHPADIDRMFISLVPPGYAPGSDA EEEEEECCCCCCCCEEEECCHHHHCCCEECCCCCCCCCCCHHHHHHHEECCCCCCCCCCC AYANAVEGWAELSDIHCEGHRPMLEIGDVMVPPHGLAICTGYDDAYNLTPARVLRQVRGL HHHHHHHHHHHHHHEEECCCCCHHHHCCEEECCCCEEEEECCCCCCCCCHHHHHHHHHCC GYRGSINHYIGMSHFFPLAPDGVGGFVVDGALPAMNAAAKAWQEAFFTDACAMGYTVIAS CCCCCCHHHCCHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEC QSYELLAQHCPDAWQQRAQDGTPARTGWSPPSALLSPANAEAMAWVRKVGVELVALLKAA CCHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC GLPVRHQVGEPWWWVTADRRICIYDNAAKAALDGDPVDIPDLGAPLTAAQKSLLDAAGTI CCCHHHHCCCCEEEEECCCEEEEECCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LAQSTADLAEAVRTAAGAAGAETLLLAFLPTVLDPATPDARRANLPVGWASPAFDVLQLE HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEC DYDWVTTGRQSLRDEGRRIAEERLGYPRDRQHYLSGFVLTGTNAAVEWPRIDAAASEAVA CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCEEEEECCCCEEECCCCCHHHHHHHH LGVAETFIWALPQVSRDGFVRLPEPTGDNPMQSFDDVLFPLSLGRDASVTPEFSTNVTIT HHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE ASGFERRNSLWSDARLQFDVGPGVRSEAELGELIAFFRARRGQARGFRLRDPSDFSSNGM ECCCHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC TGTPTPTDQILGTGDGATARFALVKRYGDSEDAQRRRITRPRAETLRVSIDNVETGDFTL CCCCCCHHHEEECCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEE APLGYITLASAPPSGAVVRAGFLFDVPVRFAEDRIDISGAEFAAGEAPSVPLVELREDA ECCCEEEEECCCCCCCEEEEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCC >Mature Secondary Structure SHWLAKRRTVQQTDMIQRFDPRFWTVNFPRPAMASVVTTAADAMRVDVVFQKADDLVGL CCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHEEEEEEEECCCCEEEE IWESEDRWDHPLLAYETRQDYSRLTLTFRWRSSGIVALNAVNGPTLTIEGRDASGTARAW EECCCCCCCCCEEEEECCCCCCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCEEE YVRLWNYADGSPTDALIRLPFSDLAGGFLLPSEADPVHPADIDRMFISLVPPGYAPGSDA EEEEEECCCCCCCCEEEECCHHHHCCCEECCCCCCCCCCCHHHHHHHEECCCCCCCCCCC AYANAVEGWAELSDIHCEGHRPMLEIGDVMVPPHGLAICTGYDDAYNLTPARVLRQVRGL HHHHHHHHHHHHHHEEECCCCCHHHHCCEEECCCCEEEEECCCCCCCCCHHHHHHHHHCC GYRGSINHYIGMSHFFPLAPDGVGGFVVDGALPAMNAAAKAWQEAFFTDACAMGYTVIAS CCCCCCHHHCCHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEC QSYELLAQHCPDAWQQRAQDGTPARTGWSPPSALLSPANAEAMAWVRKVGVELVALLKAA CCHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC GLPVRHQVGEPWWWVTADRRICIYDNAAKAALDGDPVDIPDLGAPLTAAQKSLLDAAGTI CCCHHHHCCCCEEEEECCCEEEEECCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LAQSTADLAEAVRTAAGAAGAETLLLAFLPTVLDPATPDARRANLPVGWASPAFDVLQLE HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEC DYDWVTTGRQSLRDEGRRIAEERLGYPRDRQHYLSGFVLTGTNAAVEWPRIDAAASEAVA CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCEEEEECCCCEEECCCCCHHHHHHHH LGVAETFIWALPQVSRDGFVRLPEPTGDNPMQSFDDVLFPLSLGRDASVTPEFSTNVTIT HHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE ASGFERRNSLWSDARLQFDVGPGVRSEAELGELIAFFRARRGQARGFRLRDPSDFSSNGM ECCCHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC TGTPTPTDQILGTGDGATARFALVKRYGDSEDAQRRRITRPRAETLRVSIDNVETGDFTL CCCCCCHHHEEECCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEE APLGYITLASAPPSGAVVRAGFLFDVPVRFAEDRIDISGAEFAAGEAPSVPLVELREDA ECCCEEEEECCCCCCCEEEEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA