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The map label for this gene is allB [C]

Identifier: 87201100

GI number: 87201100

Start: 3308092

End: 3309804

Strand: Direct

Name: allB [C]

Synonym: Saro_3088

Alternate gene names: 87201100

Gene position: 3308092-3309804 (Clockwise)

Preceding gene: 87201099

Following gene: 87201102

Centisome position: 92.88

GC content: 63.81

Gene sequence:

>1713_bases
GTGAGCGCGTTCGACATCGTCCTTCGCGAGGGCACCGTGGTTGATGGGACCGGCGCCGACCCATTCGTGGCCGATGTCGC
GATTTCAGGAGGACGGATCGCAGCGATCGGACCGAACCTGTCGCGCGGCACGACGGAGATCAACGCGAGTGGCCAGATCG
TCACGCCCGGCTTTGTCGATCTTCACACCCACTATGACGGACAGGTCACATGGGATAACCGCCTGGCGCCGTCGTCGTAT
CATGGGGTGACGACGGCCGTGATCGGCAATTGCGGGGTCGGCTTCGCCCCGTGCCGCCGCGATGCGGCATCCCGCGATGC
CATGGTCCGCCTGATGGAAGGGGTGGAGGACATCCCGCACCCGGTCTTGACCGAAGGCCTGCCGTGGACCTGGGAAACGT
TCCCCGACTACCTCGATTTCCTCGCTTCGCGCACATACGACATCGACGTTGCCGCCTATGTTCCGCACGCACCGCTGCGA
GTGTACGTGATGGGGCAGCGTGGAGCTGATCGCGAACCGGCTACGCAAACCGACATTGCGGAAATGTGCCGCCTTCTGGA
ACAGGCGCTCGACCGGGGCGCACTGGGGATCGCAACGTCGCGCAGTCTCTTCCACCGCTCCAGCGACGGTACGGCAATCC
CAACCTACCAGGCTGCTCAGGCCGAACTGATGGCCTTTGCAGAAGTCCTGCGTGCCAAGGGCAAAGGCGTGTTCCAGATC
GTCGAGGATATCCATGTCCCCGGCGCCAGTCTGGACAACATGCGAGAGCTGGCCCGCACATCCGGCCGGCCACTGACCTT
CTCCATCGGCACCGGCAATACCGGGCCCTATGGCTATCCGCGTCTTCTCGACGAACTGGCCGCGGCGAATGCCGAGGGGC
TGGTAATGAAGGGCCAGCTGATGCCCCGCGGAATCGGGATGATCCTGGGTTTCGAGCTGACTTTGAACCCGTTCTATACG
ACGTCCACCTTTGCGCGGCTCGCGCCACTGCCACTTGCGGAGCGCCTGGAGCAACTGCGCCGTCCCGAAATCCGTGCTGC
AATCCTTTCCGAACCGATGGATCCGGATCCGGCTCTGGTCCTGGGCCGCGCGGTGCGCGATTTCGATCACATGTTCCTGC
TCGGCGATGATCCGGATTACGAGCAGCCGCCGGAACGCAGTATTGCGGGTCGTGCCCGGGAGGCCGGAATTACACCGGAG
GAACTGGCCTACGACGTGATGACGGAGGGCGAAAGCGGCGGCTTGCTCTACCTTGCAATGGCCAATTATGCCGATGGGAG
CCTTGATGCGGTAGGCGACATCCTGTCGCACCCGGACGTGGTGCTGGGGCTGGGCGATGGCGGTGCCCATGTCGGCACGA
TTTGCGATGCGAGCTATTCGACATTCGCGCTTTGCCACTGGGCGCGAGACCGGCAGCGCGGACGAAAGACAGTGGCTGAC
ATGGTTCACCGGATGACCCAGGCAACGGCCCGAGTGATCGGACTGGAAGACCGCGGGGAACTCGCCGTTGGCAAGCGGGC
CGACATCAACGTGATCGATTTGGCACAGCTGGCGCTTCGCCCGCCACAGGTTTGCCATGATCTGCCTGCCGGTGGGCGCC
GCCTGATCCAGCGTGCGACCGGCTATAGTCTGACAATGCTAGCGGGAGAGATTGTCCTGCGCGATGACGAGCCGACCGGT
CTGTTGCCCGGTCGTCTGATCCGCGCGTCCTGA

Upstream 100 bases:

>100_bases
ATCCCGTCGATCAGGTCCGGGTCGTTCATCGCACCACGATCAAGGGCAACGTGGCGATGGGCAGGGTCATGCCGGAAGCC
GCCGAAGTGGGAGCCGGGGC

Downstream 100 bases:

>100_bases
ATTTGACTGCAATCACCTCCTGGTCGTCGAGGGCACCTCCCCGCTACGCTGGGTCAGCGTGGCGGCGGAACTCAGCAACA
GGCGCACCAGATCACCCTGC

Product: dihydroorotase

Products: Allantoate; H+ [C]

Alternate protein names: NA

Number of amino acids: Translated: 570; Mature: 569

Protein sequence:

>570_residues
MSAFDIVLREGTVVDGTGADPFVADVAISGGRIAAIGPNLSRGTTEINASGQIVTPGFVDLHTHYDGQVTWDNRLAPSSY
HGVTTAVIGNCGVGFAPCRRDAASRDAMVRLMEGVEDIPHPVLTEGLPWTWETFPDYLDFLASRTYDIDVAAYVPHAPLR
VYVMGQRGADREPATQTDIAEMCRLLEQALDRGALGIATSRSLFHRSSDGTAIPTYQAAQAELMAFAEVLRAKGKGVFQI
VEDIHVPGASLDNMRELARTSGRPLTFSIGTGNTGPYGYPRLLDELAAANAEGLVMKGQLMPRGIGMILGFELTLNPFYT
TSTFARLAPLPLAERLEQLRRPEIRAAILSEPMDPDPALVLGRAVRDFDHMFLLGDDPDYEQPPERSIAGRAREAGITPE
ELAYDVMTEGESGGLLYLAMANYADGSLDAVGDILSHPDVVLGLGDGGAHVGTICDASYSTFALCHWARDRQRGRKTVAD
MVHRMTQATARVIGLEDRGELAVGKRADINVIDLAQLALRPPQVCHDLPAGGRRLIQRATGYSLTMLAGEIVLRDDEPTG
LLPGRLIRAS

Sequences:

>Translated_570_residues
MSAFDIVLREGTVVDGTGADPFVADVAISGGRIAAIGPNLSRGTTEINASGQIVTPGFVDLHTHYDGQVTWDNRLAPSSY
HGVTTAVIGNCGVGFAPCRRDAASRDAMVRLMEGVEDIPHPVLTEGLPWTWETFPDYLDFLASRTYDIDVAAYVPHAPLR
VYVMGQRGADREPATQTDIAEMCRLLEQALDRGALGIATSRSLFHRSSDGTAIPTYQAAQAELMAFAEVLRAKGKGVFQI
VEDIHVPGASLDNMRELARTSGRPLTFSIGTGNTGPYGYPRLLDELAAANAEGLVMKGQLMPRGIGMILGFELTLNPFYT
TSTFARLAPLPLAERLEQLRRPEIRAAILSEPMDPDPALVLGRAVRDFDHMFLLGDDPDYEQPPERSIAGRAREAGITPE
ELAYDVMTEGESGGLLYLAMANYADGSLDAVGDILSHPDVVLGLGDGGAHVGTICDASYSTFALCHWARDRQRGRKTVAD
MVHRMTQATARVIGLEDRGELAVGKRADINVIDLAQLALRPPQVCHDLPAGGRRLIQRATGYSLTMLAGEIVLRDDEPTG
LLPGRLIRAS
>Mature_569_residues
SAFDIVLREGTVVDGTGADPFVADVAISGGRIAAIGPNLSRGTTEINASGQIVTPGFVDLHTHYDGQVTWDNRLAPSSYH
GVTTAVIGNCGVGFAPCRRDAASRDAMVRLMEGVEDIPHPVLTEGLPWTWETFPDYLDFLASRTYDIDVAAYVPHAPLRV
YVMGQRGADREPATQTDIAEMCRLLEQALDRGALGIATSRSLFHRSSDGTAIPTYQAAQAELMAFAEVLRAKGKGVFQIV
EDIHVPGASLDNMRELARTSGRPLTFSIGTGNTGPYGYPRLLDELAAANAEGLVMKGQLMPRGIGMILGFELTLNPFYTT
STFARLAPLPLAERLEQLRRPEIRAAILSEPMDPDPALVLGRAVRDFDHMFLLGDDPDYEQPPERSIAGRAREAGITPEE
LAYDVMTEGESGGLLYLAMANYADGSLDAVGDILSHPDVVLGLGDGGAHVGTICDASYSTFALCHWARDRQRGRKTVADM
VHRMTQATARVIGLEDRGELAVGKRADINVIDLAQLALRPPQVCHDLPAGGRRLIQRATGYSLTMLAGEIVLRDDEPTGL
LPGRLIRAS

Specific function: Involved In The Anaerobic Utilization Of Allantoin. [C]

COG id: COG3653

COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: 3.5.2.5 [C]

Molecular weight: Translated: 61441; Mature: 61309

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAFDIVLREGTVVDGTGADPFVADVAISGGRIAAIGPNLSRGTTEINASGQIVTPGFVD
CCCCEEEEECCEEEECCCCCCEEEEEEECCCEEEEECCCCCCCCEEECCCCCEECCCEEE
LHTHYDGQVTWDNRLAPSSYHGVTTAVIGNCGVGFAPCRRDAASRDAMVRLMEGVEDIPH
EEECCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PVLTEGLPWTWETFPDYLDFLASRTYDIDVAAYVPHAPLRVYVMGQRGADREPATQTDIA
HHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHH
EMCRLLEQALDRGALGIATSRSLFHRSSDGTAIPTYQAAQAELMAFAEVLRAKGKGVFQI
HHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
VEDIHVPGASLDNMRELARTSGRPLTFSIGTGNTGPYGYPRLLDELAAANAEGLVMKGQL
HHHHCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEECCC
MPRGIGMILGFELTLNPFYTTSTFARLAPLPLAERLEQLRRPEIRAAILSEPMDPDPALV
CCCCCCEEEEEEEEECCCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCCCCCHHHH
LGRAVRDFDHMFLLGDDPDYEQPPERSIAGRAREAGITPEELAYDVMTEGESGGLLYLAM
HHHHHHCCCCEEEECCCCCCCCCCCHHHHCCHHHCCCCHHHHHHHHHCCCCCCCEEEEEE
ANYADGSLDAVGDILSHPDVVLGLGDGGAHVGTICDASYSTFALCHWARDRQRGRKTVAD
CCCCCCCHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
MVHRMTQATARVIGLEDRGELAVGKRADINVIDLAQLALRPPQVCHDLPAGGRRLIQRAT
HHHHHHHHHHHEEECCCCCCEEECCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHC
GYSLTMLAGEIVLRDDEPTGLLPGRLIRAS
CCEEEEEECEEEEECCCCCCCCCCCEEECC
>Mature Secondary Structure 
SAFDIVLREGTVVDGTGADPFVADVAISGGRIAAIGPNLSRGTTEINASGQIVTPGFVD
CCCEEEEECCEEEECCCCCCEEEEEEECCCEEEEECCCCCCCCEEECCCCCEECCCEEE
LHTHYDGQVTWDNRLAPSSYHGVTTAVIGNCGVGFAPCRRDAASRDAMVRLMEGVEDIPH
EEECCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PVLTEGLPWTWETFPDYLDFLASRTYDIDVAAYVPHAPLRVYVMGQRGADREPATQTDIA
HHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHH
EMCRLLEQALDRGALGIATSRSLFHRSSDGTAIPTYQAAQAELMAFAEVLRAKGKGVFQI
HHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
VEDIHVPGASLDNMRELARTSGRPLTFSIGTGNTGPYGYPRLLDELAAANAEGLVMKGQL
HHHHCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEECCC
MPRGIGMILGFELTLNPFYTTSTFARLAPLPLAERLEQLRRPEIRAAILSEPMDPDPALV
CCCCCCEEEEEEEEECCCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCCCCCHHHH
LGRAVRDFDHMFLLGDDPDYEQPPERSIAGRAREAGITPEELAYDVMTEGESGGLLYLAM
HHHHHHCCCCEEEECCCCCCCCCCCHHHHCCHHHCCCCHHHHHHHHHCCCCCCCEEEEEE
ANYADGSLDAVGDILSHPDVVLGLGDGGAHVGTICDASYSTFALCHWARDRQRGRKTVAD
CCCCCCCHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
MVHRMTQATARVIGLEDRGELAVGKRADINVIDLAQLALRPPQVCHDLPAGGRRLIQRAT
HHHHHHHHHHHEEECCCCCCEEECCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHC
GYSLTMLAGEIVLRDDEPTGLLPGRLIRAS
CCEEEEEECEEEEECCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Allantoin; H2O [C]

Specific reaction: Allantoin + H2O --> Allantoate + H+ [C]

General reaction: Carboxylic acid amide hydrolysis [C]

Inhibitor: Dithiothreitol; p-Chloromercuribenzene-sulphonic acid [C]

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]