| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87201094
Identifier: 87201094
GI number: 87201094
Start: 3301191
End: 3302078
Strand: Reverse
Name: 87201094
Synonym: Saro_3082
Alternate gene names: NA
Gene position: 3302078-3301191 (Counterclockwise)
Preceding gene: 87201095
Following gene: 87201093
Centisome position: 92.71
GC content: 68.36
Gene sequence:
>888_bases ATGAAGCGGATGCTGGTCGCGGGCCTTGCCCTGCTGCTGTCGGGGGCCTGTGCGCCGCTGGCCGACACCGGGCTCGCGAG CGCGCCCACCGCGCGCTCCGTCACCGCGCTTTCGCAGCATTCGCTTCACCTCGCGAGCGCGCCCAACTTCCGTGACATCG GCGGGTACCGTACGCAGGACGGTCGACTCGTGCGTCAGGGTATCGCCTACCGCTCCGACCAGCTCGACCGGCTTGGCGAC GCCGACCTTGCAGCGATCGCCAGTTTGCGTCCCTCGGTGGTGGTCGACCTTCGCACCAAGACGGAGCGGGACCGCGAACC CGATCGGGTGCCTGCCGGCGCGCGCCACCTCGTTCTCGATGTCGCCGCCGACAGCACCCAGTCGCTCGGCGGCGACATGC GACAGGCCATGGCGCAGATCGCCAGCGGACAGGGCGAAGCGTTGCTGGTCGACGCCAATCGCGAATTCGTGACCCTACCC AGCGCGCGGCGATCCTATGCCACGCTGATCCGGCTGATGCTCGATTCCGATGGTCCGGTGGTGTTCCACTGCACTGCCGG CAAGGACCGCACCGGCTGGGCGACGGCTGTCGTCCTCACCCTGCTCGGCGTACCGCGCGCAACGGTGATGGAGGACTATC TGCTCAGCAATGCAAGGCTCGCCGACAAGAACCGGGCCACCCTTGCAGCGCTGGCGCGATCGGGCAGCGGGATAGACCCG GCCTATCTCCAGCCGGTCCTGACCGTACAGCCTCGCTACATCGAGGCGGCATTCGACGAGGTCGACCACGCCTACGGCTC GTTCGACAACTACGCCCGTGCGGGCCTTGGCCTTTCCGACGCGGAACTCCAGCGCCTGCGAGCCAGGTTCCTGACCCGCG CCCGTTAA
Upstream 100 bases:
>100_bases CCCGCGTGATCCGGTTTCTGCTTTCCTCGGAAGCGAGCTATGTCACCGGTGCCGAGCTAGTGGTCGATGGCGGCAACATC TCGTCGCAGAGGGGGTGAAC
Downstream 100 bases:
>100_bases GGCGCAACCGTCCCTTCCGCGAGGAATGCGGTCGCTTCGTGGGGGCGGCTTCCTTGCGGTTCCGAAACTTCACCCTCCAA GCCGATCAACCGCGAGGGGA
Product: protein tyrosine/serine phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MKRMLVAGLALLLSGACAPLADTGLASAPTARSVTALSQHSLHLASAPNFRDIGGYRTQDGRLVRQGIAYRSDQLDRLGD ADLAAIASLRPSVVVDLRTKTERDREPDRVPAGARHLVLDVAADSTQSLGGDMRQAMAQIASGQGEALLVDANREFVTLP SARRSYATLIRLMLDSDGPVVFHCTAGKDRTGWATAVVLTLLGVPRATVMEDYLLSNARLADKNRATLAALARSGSGIDP AYLQPVLTVQPRYIEAAFDEVDHAYGSFDNYARAGLGLSDAELQRLRARFLTRAR
Sequences:
>Translated_295_residues MKRMLVAGLALLLSGACAPLADTGLASAPTARSVTALSQHSLHLASAPNFRDIGGYRTQDGRLVRQGIAYRSDQLDRLGD ADLAAIASLRPSVVVDLRTKTERDREPDRVPAGARHLVLDVAADSTQSLGGDMRQAMAQIASGQGEALLVDANREFVTLP SARRSYATLIRLMLDSDGPVVFHCTAGKDRTGWATAVVLTLLGVPRATVMEDYLLSNARLADKNRATLAALARSGSGIDP AYLQPVLTVQPRYIEAAFDEVDHAYGSFDNYARAGLGLSDAELQRLRARFLTRAR >Mature_295_residues MKRMLVAGLALLLSGACAPLADTGLASAPTARSVTALSQHSLHLASAPNFRDIGGYRTQDGRLVRQGIAYRSDQLDRLGD ADLAAIASLRPSVVVDLRTKTERDREPDRVPAGARHLVLDVAADSTQSLGGDMRQAMAQIASGQGEALLVDANREFVTLP SARRSYATLIRLMLDSDGPVVFHCTAGKDRTGWATAVVLTLLGVPRATVMEDYLLSNARLADKNRATLAALARSGSGIDP AYLQPVLTVQPRYIEAAFDEVDHAYGSFDNYARAGLGLSDAELQRLRARFLTRAR
Specific function: Unknown
COG id: COG2365
COG function: function code T; Protein tyrosine/serine phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the protein-tyrosine phosphatase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000387 - InterPro: IPR016130 [H]
Pfam domain/function: NA
EC number: =3.1.3.48 [H]
Molecular weight: Translated: 31653; Mature: 31653
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50056 TYR_PHOSPHATASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRMLVAGLALLLSGACAPLADTGLASAPTARSVTALSQHSLHLASAPNFRDIGGYRTQD CCHHHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHCEEECCCCCCCCCCCEECCC GRLVRQGIAYRSDQLDRLGDADLAAIASLRPSVVVDLRTKTERDREPDRVPAGARHLVLD CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEE VAADSTQSLGGDMRQAMAQIASGQGEALLVDANREFVTLPSARRSYATLIRLMLDSDGPV ECCCCHHHHCHHHHHHHHHHHCCCCCEEEEECCCCEEECCCHHHHHHHHHHHHCCCCCCE VFHCTAGKDRTGWATAVVLTLLGVPRATVMEDYLLSNARLADKNRATLAALARSGSGIDP EEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCH AYLQPVLTVQPRYIEAAFDEVDHAYGSFDNYARAGLGLSDAELQRLRARFLTRAR HHHCHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MKRMLVAGLALLLSGACAPLADTGLASAPTARSVTALSQHSLHLASAPNFRDIGGYRTQD CCHHHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHCEEECCCCCCCCCCCEECCC GRLVRQGIAYRSDQLDRLGDADLAAIASLRPSVVVDLRTKTERDREPDRVPAGARHLVLD CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEE VAADSTQSLGGDMRQAMAQIASGQGEALLVDANREFVTLPSARRSYATLIRLMLDSDGPV ECCCCHHHHCHHHHHHHHHHHCCCCCEEEEECCCCEEECCCHHHHHHHHHHHHCCCCCCE VFHCTAGKDRTGWATAVVLTLLGVPRATVMEDYLLSNARLADKNRATLAALARSGSGIDP EEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCH AYLQPVLTVQPRYIEAAFDEVDHAYGSFDNYARAGLGLSDAELQRLRARFLTRAR HHHCHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8405966 [H]