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The map label for this gene is ybjT [C]

Identifier: 87201093

GI number: 87201093

Start: 3299458

End: 3300390

Strand: Reverse

Name: ybjT [C]

Synonym: Saro_3081

Alternate gene names: 87201093

Gene position: 3300390-3299458 (Counterclockwise)

Preceding gene: 87201094

Following gene: 87201091

Centisome position: 92.67

GC content: 69.35

Gene sequence:

>933_bases
ATGCTGGTGGCGCTGGTGGGCGGCACCGGTTTCTTCGGTACGCATCTGGCGCAGGAACTGCTGGCGCGTGGCGCGAGGCT
GCGCGTGTGCAGCCGCCACCCGGAACGCGCGTTCCGGCTGAAGCCGCTGGGCACGCTGGGCCAGATCCAGTTCGTTGCGA
CCGACGTGACCAAGCCGCGCACGGTGGCAGCGGCGCTGACCGGCGTCGATGCCGTCGTCAACCTCGTCGGCGCGTTCAGC
GGCGATCTCGATTCGCTTCAGGGCGAAGGCGTGGCTCGCGTGGCCGAGGCGGCGAAGGCAGGCGGGGCGAAGGCATTCGT
CCATGTTTCCGCGCTGGGCGCCGATGCCGGTTCGGACGTGGCATATGCCCGCACCAAGGCCGAAGGCGAGAAGGCGGCGC
TTGCCGCGTTCCCGACCGCGACGGTCGTGCGCCCATCGATCCTGTTCGGCGAGGACGACAATTTCCTCAACATGTTCGGC
GGACTGATGGCCAAGCTGCCGGTGCTGCCGGTGTTCGGCCCGACCGCGCAATTGCAGCCGGTGTTCGTCGACGATGCGGC
AGAGGCGGTGGCCAATGCCCTGGCCGATCCGCGCGCCCATGGCGGCAGGACATACGAACTGGCCGGTCCGGAAGTGGTGA
CGATGGGCGAACTCAACCGCCGCATCGCCCGCGCCGCCGACCGTTCGCCCATGTTGATCGAGCTGCCAGACGAAGTTTCG
GGCGCTTTCGCCGCGCTGACCGGCTGGCTGCCCGGCGCGCCGATGAGCCGCGACCAGTGGAAGCTGCTCAAGGCCGGCAA
CGTCGCTTCCGGCACGCTGCCCGGGATCGAGGCGCTGGGCGTGACGCCGCGCCCGATGGGCCTGTTCCTCGACCGCTGGA
TGACCCGTTTCCGCAAGTTCGGACGATTCGGCGTGAAGGCCAAGGCGGCCTGA

Upstream 100 bases:

>100_bases
CTCGGGAACCCGCGGGCACGCGGGGGAATCATATCTCAGTTTCATTCGACCAGGCAGGATACGGGCAATGGCAAACGGCA
GGACGCGCGATCTGGAAGGT

Downstream 100 bases:

>100_bases
TCGGCCGCTTCCGCCCGCCAGGGGGTTTACACGGTTTACACTGTCCAGGGGAGAAAGTCGGGGCCGGCTTTCTCCCTTTT
CCTTTTCGTGTCCGGTCAAG

Product: NAD-dependent epimerase/dehydratase

Products: NAD+; ubiquinol

Alternate protein names: NADH Dehydrogenase; NADH-Ubiquinone Oxidoreductase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; Oxidoreductase; Nucleoside-Diphosphate-Sugar Epimerase; NADH-Ubiquinone Oxidoreductase Subunit; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase Family; NADH-Ubiquinone Oxireductase; NADH Dehydrogenase/Oxidoreductase-Like Protein; NADH-Ubiquinone Oxidoreductase Family Protein; NAD-Dependent Epimerase/Dehydratase Family Protein; NAD Dependent Epimerase/Dehydratase Family Protein; 3-Beta-Hydroxy-Delta(5)-Steroid Dehydrogenase; NADH Ubiquinone Oxidoreductase; Nucleoside-Diphosphate-Sugar Epimerases; NADH Dehydrogenase 1 Alpha Subcomplex; Dehydrogenase; NADH Dehydrogenase/NADH Dehydrogenase Protein; Ubiquinone Dependent NADH Dehydrogenase; NADH Dehydrogenase Subunit; Homolog NADH Dehydrogenase; NAD Dependent Epimerase; Nucleoside-Diphosphate Sugar Epimerase; NAD Dependent Epimerase/Dehydratase Family; NADH-Ubiquinone Oxidoreductase -Like Protein; NADH-Ubiquinone Oxidoreductase Putativ; NADH-Quinone Oxidoreductase

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MLVALVGGTGFFGTHLAQELLARGARLRVCSRHPERAFRLKPLGTLGQIQFVATDVTKPRTVAAALTGVDAVVNLVGAFS
GDLDSLQGEGVARVAEAAKAGGAKAFVHVSALGADAGSDVAYARTKAEGEKAALAAFPTATVVRPSILFGEDDNFLNMFG
GLMAKLPVLPVFGPTAQLQPVFVDDAAEAVANALADPRAHGGRTYELAGPEVVTMGELNRRIARAADRSPMLIELPDEVS
GAFAALTGWLPGAPMSRDQWKLLKAGNVASGTLPGIEALGVTPRPMGLFLDRWMTRFRKFGRFGVKAKAA

Sequences:

>Translated_310_residues
MLVALVGGTGFFGTHLAQELLARGARLRVCSRHPERAFRLKPLGTLGQIQFVATDVTKPRTVAAALTGVDAVVNLVGAFS
GDLDSLQGEGVARVAEAAKAGGAKAFVHVSALGADAGSDVAYARTKAEGEKAALAAFPTATVVRPSILFGEDDNFLNMFG
GLMAKLPVLPVFGPTAQLQPVFVDDAAEAVANALADPRAHGGRTYELAGPEVVTMGELNRRIARAADRSPMLIELPDEVS
GAFAALTGWLPGAPMSRDQWKLLKAGNVASGTLPGIEALGVTPRPMGLFLDRWMTRFRKFGRFGVKAKAA
>Mature_310_residues
MLVALVGGTGFFGTHLAQELLARGARLRVCSRHPERAFRLKPLGTLGQIQFVATDVTKPRTVAAALTGVDAVVNLVGAFS
GDLDSLQGEGVARVAEAAKAGGAKAFVHVSALGADAGSDVAYARTKAEGEKAALAAFPTATVVRPSILFGEDDNFLNMFG
GLMAKLPVLPVFGPTAQLQPVFVDDAAEAVANALADPRAHGGRTYELAGPEVVTMGELNRRIARAADRSPMLIELPDEVS
GAFAALTGWLPGAPMSRDQWKLLKAGNVASGTLPGIEALGVTPRPMGLFLDRWMTRFRKFGRFGVKAKAA

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6681764, Length=309, Percent_Identity=28.8025889967638, Blast_Score=129, Evalue=3e-30,
Organism=Escherichia coli, GI87081793, Length=237, Percent_Identity=22.7848101265823, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17556106, Length=233, Percent_Identity=30.0429184549356, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24667554, Length=233, Percent_Identity=29.1845493562232, Blast_Score=110, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.6.5.3; 1.6.99.3

Molecular weight: Translated: 32416; Mature: 32416

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVALVGGTGFFGTHLAQELLARGARLRVCSRHPERAFRLKPLGTLGQIQFVATDVTKPR
CEEEEECCCCHHHHHHHHHHHHCCCEEEEHHCCCCCEEEECCCCCCCEEEEEEECCCCCH
TVAAALTGVDAVVNLVGAFSGDLDSLQGEGVARVAEAAKAGGAKAFVHVSALGADAGSDV
HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCC
AYARTKAEGEKAALAAFPTATVVRPSILFGEDDNFLNMFGGLMAKLPVLPVFGPTAQLQP
EEEHHHCCCCCEEEEECCCHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCE
VFVDDAAEAVANALADPRAHGGRTYELAGPEVVTMGELNRRIARAADRSPMLIELPDEVS
EEECHHHHHHHHHHCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCCEEEECCHHHH
GAFAALTGWLPGAPMSRDQWKLLKAGNVASGTLPGIEALGVTPRPMGLFLDRWMTRFRKF
HHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
GRFGVKAKAA
CCCCCEECCC
>Mature Secondary Structure
MLVALVGGTGFFGTHLAQELLARGARLRVCSRHPERAFRLKPLGTLGQIQFVATDVTKPR
CEEEEECCCCHHHHHHHHHHHHCCCEEEEHHCCCCCEEEECCCCCCCEEEEEEECCCCCH
TVAAALTGVDAVVNLVGAFSGDLDSLQGEGVARVAEAAKAGGAKAFVHVSALGADAGSDV
HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCC
AYARTKAEGEKAALAAFPTATVVRPSILFGEDDNFLNMFGGLMAKLPVLPVFGPTAQLQP
EEEHHHCCCCCEEEEECCCHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCE
VFVDDAAEAVANALADPRAHGGRTYELAGPEVVTMGELNRRIARAADRSPMLIELPDEVS
EEECHHHHHHHHHHCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCCEEEECCHHHH
GAFAALTGWLPGAPMSRDQWKLLKAGNVASGTLPGIEALGVTPRPMGLFLDRWMTRFRKF
HHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
GRFGVKAKAA
CCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA