| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201034
Identifier: 87201034
GI number: 87201034
Start: 3233743
End: 3234369
Strand: Direct
Name: 87201034
Synonym: Saro_3022
Alternate gene names: NA
Gene position: 3233743-3234369 (Clockwise)
Preceding gene: 87201033
Following gene: 87201035
Centisome position: 90.8
GC content: 57.89
Gene sequence:
>627_bases ATGGCAATCATGGCAACAGATACAGGCGGTGGCGGCGACTTTAGCCCCGTCCCTCCTGGCACTCACTTTGCTGTTTGCGA TCAGGTTGTGGACCTTGGCAAGCAGAAGTCCGAATTTCAGGGCGAAGTGAAGGTCCAGCACAAGGTTTACATTCGCTGGC AAATCCCTGCCGAGCGCGTCGAATGGGAGCATGACGGGAAAAAGCATGAAGGGCCTGCCGTTATCGGCAAGACCTATACG CTTTCCCTGAGCGACAAGGCCAACCTGCGCAAGGATTTGCAGGCATGGCGCAGCAAGCCATTCACGCCTGATGAACTGCG CGGCTTCGACATTGCCAAGCTTCTCGGCGCGCCTGCGACCATCACCATCACGCACACCGAAAAGGACGGCAAGACGTATG CCAACGTCGCCAGTCTTGGCAGCATCCCCAAGGGTATGCCGAAGCCGGAAGCAGAAGGTGAATTGCTGATCTACGACGCC GACAATATGGGTACGTTCGATAAGCTGTCCAAGCGCATGCAGGAGCGCATTCGCGCGCAGATCGTCGACACCGGCAAGAC CGAAGCAGGTGATCCGGACGCATGGCGCAGCGGCGGCGAAGACCTCGACGACGACATTCCCTTCTAA
Upstream 100 bases:
>100_bases GCCCTGCCGCGCGCCGGGAAATCCCTGGCGTGACGTTCACCGAACAAAAGCGGGCAGCTTAACCAACCCACCAACCACCA CGAACGGAAGGAAAGTAGAA
Downstream 100 bases:
>100_bases CCAGTCACTACCCGGTAATCCGGGCTTACCCGCGCGCTGGCAGACCGCGTGTGAACGTCTGCCACAATTGAATGAGGTAT GTATGCGCAATCCGACCATC
Product: putative phage associated protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MAIMATDTGGGGDFSPVPPGTHFAVCDQVVDLGKQKSEFQGEVKVQHKVYIRWQIPAERVEWEHDGKKHEGPAVIGKTYT LSLSDKANLRKDLQAWRSKPFTPDELRGFDIAKLLGAPATITITHTEKDGKTYANVASLGSIPKGMPKPEAEGELLIYDA DNMGTFDKLSKRMQERIRAQIVDTGKTEAGDPDAWRSGGEDLDDDIPF
Sequences:
>Translated_208_residues MAIMATDTGGGGDFSPVPPGTHFAVCDQVVDLGKQKSEFQGEVKVQHKVYIRWQIPAERVEWEHDGKKHEGPAVIGKTYT LSLSDKANLRKDLQAWRSKPFTPDELRGFDIAKLLGAPATITITHTEKDGKTYANVASLGSIPKGMPKPEAEGELLIYDA DNMGTFDKLSKRMQERIRAQIVDTGKTEAGDPDAWRSGGEDLDDDIPF >Mature_207_residues AIMATDTGGGGDFSPVPPGTHFAVCDQVVDLGKQKSEFQGEVKVQHKVYIRWQIPAERVEWEHDGKKHEGPAVIGKTYTL SLSDKANLRKDLQAWRSKPFTPDELRGFDIAKLLGAPATITITHTEKDGKTYANVASLGSIPKGMPKPEAEGELLIYDAD NMGTFDKLSKRMQERIRAQIVDTGKTEAGDPDAWRSGGEDLDDDIPF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22868; Mature: 22737
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIMATDTGGGGDFSPVPPGTHFAVCDQVVDLGKQKSEFQGEVKVQHKVYIRWQIPAERV CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCHHHH EWEHDGKKHEGPAVIGKTYTLSLSDKANLRKDLQAWRSKPFTPDELRGFDIAKLLGAPAT CCCCCCCCCCCCEEECEEEEEEECCHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCEE ITITHTEKDGKTYANVASLGSIPKGMPKPEAEGELLIYDADNMGTFDKLSKRMQERIRAQ EEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH IVDTGKTEAGDPDAWRSGGEDLDDDIPF HHCCCCCCCCCCHHHHCCCCCCCCCCCC >Mature Secondary Structure AIMATDTGGGGDFSPVPPGTHFAVCDQVVDLGKQKSEFQGEVKVQHKVYIRWQIPAERV EEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCHHHH EWEHDGKKHEGPAVIGKTYTLSLSDKANLRKDLQAWRSKPFTPDELRGFDIAKLLGAPAT CCCCCCCCCCCCEEECEEEEEEECCHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCEE ITITHTEKDGKTYANVASLGSIPKGMPKPEAEGELLIYDADNMGTFDKLSKRMQERIRAQ EEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH IVDTGKTEAGDPDAWRSGGEDLDDDIPF HHCCCCCCCCCCHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA