| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87201028
Identifier: 87201028
GI number: 87201028
Start: 3230363
End: 3230728
Strand: Direct
Name: 87201028
Synonym: Saro_3016
Alternate gene names: NA
Gene position: 3230363-3230728 (Clockwise)
Preceding gene: 87201027
Following gene: 87201029
Centisome position: 90.7
GC content: 59.02
Gene sequence:
>366_bases ATGACCAAAGCGCTCTGTCTTATCTCCGCCATTGCCCTGGCTGGTTGCGCATCCACCGCGATGAAGCAATATGTCGGGGA GTCCGTCACGGAGGCGGTGATGAGACTAGGGCCTCCAGAGAACGCCTTTGATCTTCCGGACGGGCGACGGGCTTTCCAGT GGCATTGGGGTGGAGGCGCGGTTGTTGTGCCGGGGCATACTGCGGCGACGGTCGCTCCTGTTGGCTCCGTGGCAGTGGTA AATGCAACATCGACCCCAGCTTACGTAGCCGAGAGCGATGGCTGTCTTGTGACACTGATCGCAAAACCGGTCGGCAACGA TTACCGGGTGGAAGAGTACCGAATACCCAAACGACTGGTATGCTGA
Upstream 100 bases:
>100_bases CCAGCAATCCAGCGCACATGCCGATCAAGCTGAATAGCCAGGAGCCTGGGATCGTGGAAACACGGATCGCCGCAATCGTC GTTGCATCAGTGAGGCCCGA
Downstream 100 bases:
>100_bases TCGCCAAGAGATTGCCCCGCTTCGGCGGGGTTTTTCATGGCCTGAGCAGAAAAATACCATATCGGCATATTCGTTGTTGA CCCACTAATACCGAAACGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MTKALCLISAIALAGCASTAMKQYVGESVTEAVMRLGPPENAFDLPDGRRAFQWHWGGGAVVVPGHTAATVAPVGSVAVV NATSTPAYVAESDGCLVTLIAKPVGNDYRVEEYRIPKRLVC
Sequences:
>Translated_121_residues MTKALCLISAIALAGCASTAMKQYVGESVTEAVMRLGPPENAFDLPDGRRAFQWHWGGGAVVVPGHTAATVAPVGSVAVV NATSTPAYVAESDGCLVTLIAKPVGNDYRVEEYRIPKRLVC >Mature_120_residues TKALCLISAIALAGCASTAMKQYVGESVTEAVMRLGPPENAFDLPDGRRAFQWHWGGGAVVVPGHTAATVAPVGSVAVVN ATSTPAYVAESDGCLVTLIAKPVGNDYRVEEYRIPKRLVC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12661; Mature: 12530
Theoretical pI: Translated: 7.29; Mature: 7.29
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKALCLISAIALAGCASTAMKQYVGESVTEAVMRLGPPENAFDLPDGRRAFQWHWGGGA CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCE VVVPGHTAATVAPVGSVAVVNATSTPAYVAESDGCLVTLIAKPVGNDYRVEEYRIPKRLV EEECCCCCEEECCCCCEEEEECCCCCCEEECCCCEEEEEEECCCCCCEEEHHCCCCHHCC C C >Mature Secondary Structure TKALCLISAIALAGCASTAMKQYVGESVTEAVMRLGPPENAFDLPDGRRAFQWHWGGGA CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCE VVVPGHTAATVAPVGSVAVVNATSTPAYVAESDGCLVTLIAKPVGNDYRVEEYRIPKRLV EEECCCCCEEECCCCCEEEEECCCCCCEEECCCCEEEEEEECCCCCCEEEHHCCCCHHCC C C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA